Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271898g00007 ATGCCTCTCAAATCTGATGGCTCACTCTGCATAATGGAAGCTCTCACTTCATCACAAACCCACCAAGTGATGGTGCCAAGTTCTTCATGTTCATCTCCAAAGCTTGAAGACTTTCTTGGTGGTGCAACAATGGGAGCTCATGAATATGCACTTGCTTGCAACAATGATGGCTCTGCTAATATGCTACCATTTGTGGAAGAAGAAGAAGAAGAAACAAAGGAACCCCATAATCAGCATCAAATGCATCAAGTTGAAGAGCAAGGAAACTGGGTTAATGGTAACAATGGCATGGTGGAAAGTGTTAATGTTAATGTTGGTAATGGTGGCGGTGGAAATGGGGGTTTGAAATCTTTGAGTCTTTCAATGAGTCCTGGTTGTTCTTCATCTTCTCAACAATCATCAAGCCATGTAACAGTTTCAACAACTCATCATCAGAATCAGAATCAGATCTCAGCAGCAGGCTCTAATAATTCTTGCAAGGCCATGGAAGTTGCAAAGAACAAGAGAGGAGGTGGACACAATAATAGTAGCAAGCAAACTGTTCATAGGAAATCCATTGAGACATTTGGTCAAAGGACTTCTCAGTACAGAGGTGTCACAAGGCATAGATGGACCGGCAGATATGAAGCACATTTGTGGGATAATAGCTGCAAGAAGGAAGGGCAAACAAGGAAAGGAAGACAAGGTGGCTATGACATGGAAGAAAAAGCTGCAAGGGCTTATGATCTTGCAGCCCTTAAGTATTGGGGACCTTCAACACATATAAACTTCCCGCTAGAGAATTATCAAAATGAACTTGAAGAAATGAAGAACATGAACAGGCAGGAATATGTTGCACATTTGAGAAGGAAAAGTAGTGGATTTTCAAGGGGAGCTTCAATGTATAGAGGGGTGACAAGGCACCATCAACATGGGAGATGGCAAGCAAGGATAGGAAGAGTAGCAGGAAATAAGGACCTTTATCTTGGGACATTCAGCACTCAAGAGGAAGCAGCTGAAGCATATGATGTGGCTGCAATCAAATTCAGAGGAGTGAATGCAGTCACAAACTTTGACATATCAAGATATGATGTTGAAAGGATCATGGCTAGTAACACCCTTCTTGCCGGAGAATTGGCCAGAAGAAACAACCAAGAACCGCCCAAGGCGATGGAGGCGGCTCCGGCTCCGGCCCCGGCACCAACATTAGAGTACAATGTTGTAACAACTCACATCAACAACAAGGAATTGCTAGAAGTTGAAGGTTGTAACACCAACAACATTGAAAATGGTACTACTTCAGATCAATGGAAGAAAATTGGATTGTTGTATCAACAACAACAACAATCCAATAACAATAGTAATGGGGTTTGTGGAAATTATAGAAATTCCCAAAATTTTTGTGGTGGGGCCCTACAAGATCTAATTGGAATTGATTCAGTTGTTGGATCAACCCATCATCATCATCATCATCAAAACCCTAATATGGTGTTAGATGAGTCTAATTCTAATGCAAAGATGGGAGGGACTACTACTCATTTTTCAAACCCATCTTCACTTGTGACAAGTTTGAGCAACTCATCAAGAGAAGGTAGCCCTGACCACAACAAGAACAACAATAGTAATATCCCCACATCATCACTTCTCTTTCATCAAAACCAAAAGCAACATCATCATCATCCAATGCTTTTGCCGAAGGTTAATGTTGTTAGCCCTATTGTTGCCAATAGTGGTAGTAGTACTACTACTAGTGTTGTTGGCTCTAATTGGTTCCCTTCAGCAGCTGCTCAAATTAGGTCTACTACTATGTCTCCTATGCCGATTTTTGCGGTATGGGCTGATCCGTAA 1827 0.4165 MPLKSDGSLCIMEALTSSQTHQVMVPSSSCSSPKLEDFLGGATMGAHEYALACNNDGSANMLPFVEEEEEETKEPHNQHQMHQVEEQGNWVNGNNGMVESVNVNVGNGGGGNGGLKSLSLSMSPGCSSSSQQSSSHVTVSTTHHQNQNQISAAGSNNSCKAMEVAKNKRGGGHNNSSKQTVHRKSIETFGQRTSQYRGVTRHRWTGRYEAHLWDNSCKKEGQTRKGRQGGYDMEEKAARAYDLAALKYWGPSTHINFPLENYQNELEEMKNMNRQEYVAHLRRKSSGFSRGASMYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDVAAIKFRGVNAVTNFDISRYDVERIMASNTLLAGELARRNNQEPPKAMEAAPAPAPAPTLEYNVVTTHINNKELLEVEGCNTNNIENGTTSDQWKKIGLLYQQQQQSNNNSNGVCGNYRNSQNFCGGALQDLIGIDSVVGSTHHHHHHQNPNMVLDESNSNAKMGGTTTHFSNPSSLVTSLSNSSREGSPDHNKNNNSNIPTSSLLFHQNQKQHHHHPMLLPKVNVVSPIVANSGSSTTTSVVGSNWFPSAAAQIRSTTMSPMPIFAVWADP 608
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271898g00007 608 SUPERFAMILY DNA-binding domain 194 260 IPR016177 GO:0003677
Stsc271898g00007 608 FunFam AP2-like ethylene-responsive transcription factor ANT 194 260 - -
Stsc271898g00007 608 ProSiteProfiles AP2/ERF domain profile. 294 352 IPR001471 GO:0003700|GO:0006355
Stsc271898g00007 608 Coils Coil 259 279 - -
Stsc271898g00007 608 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 31 449 - -
Stsc271898g00007 608 FunFam AP2-like ethylene-responsive transcription factor 293 354 - -
Stsc271898g00007 608 MobiDBLite consensus disorder prediction 476 539 - -
Stsc271898g00007 608 MobiDBLite consensus disorder prediction 121 157 - -
Stsc271898g00007 608 PRINTS Ethylene responsive element binding protein signature 196 207 IPR001471 GO:0003700|GO:0006355
Stsc271898g00007 608 PRINTS Ethylene responsive element binding protein signature 334 354 IPR001471 GO:0003700|GO:0006355
Stsc271898g00007 608 SMART rav1_2 294 358 IPR001471 GO:0003700|GO:0006355
Stsc271898g00007 608 SMART rav1_2 195 264 IPR001471 GO:0003700|GO:0006355
Stsc271898g00007 608 CDD AP2 293 354 IPR001471 GO:0003700|GO:0006355
Stsc271898g00007 608 CDD AP2 194 258 IPR001471 GO:0003700|GO:0006355
Stsc271898g00007 608 Pfam AP2 domain 295 344 IPR001471 GO:0003700|GO:0006355
Stsc271898g00007 608 Pfam AP2 domain 195 250 IPR001471 GO:0003700|GO:0006355
Stsc271898g00007 608 Gene3D AP2/ERF domain 294 354 IPR036955 GO:0003700|GO:0006355
Stsc271898g00007 608 Gene3D AP2/ERF domain 194 260 IPR036955 GO:0003700|GO:0006355
Stsc271898g00007 608 ProSiteProfiles AP2/ERF domain profile. 195 258 IPR001471 GO:0003700|GO:0006355
Stsc271898g00007 608 MobiDBLite consensus disorder prediction 489 539 - -
Stsc271898g00007 608 SUPERFAMILY DNA-binding domain 293 354 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271898g00007 Stsc-Chr271898 49469 55527 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271898g00007 1 377 AP2-EREBP Transcription Factor Family AT4G37750 61.461 1.37e-141 421
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Stsc271898g00007 AP2 4.1e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271898g00007 K09285 - fve:101300121 481.87