Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271898g00005 ATGCTTCTAAGTTGCAGCCCAATGGTCTACACTGCAGTACTGAATGCTTCACTTCAACTCAATTTATTTGATATCATATCTAACATTAATAAGGAGAAAGCAGCCGCGGCGGCAAAAGCACCTTTCAGAGGTGTTTCTGCCTCCGAGATTGCTTCAAAGCTTGATACAGCAACGAAGACACAGCATCCAGAATTGTCTCGTAGGCTTGACCGGATGCTGTGTCTTCTTGCAAGCTACTCTCTTCTCAATTGCTCCACGCGTGTTAGTGAAGATGGTAGCGTTGAGAGAGTTTTTGAAGTATCTCTGGTTGGTAAATACTTTGTTGTTAATGGTGATGGGAATGAGAATGATCATGGTTCTGTAGCTTCTTTCTCAGCATTTATGGGTCACCGAAAACTTGTTGATGCTTTCCTCAATTTTAAGGACATAATTTTGGATTGTGATAAAGGGCTCTTCATGAAAACTCATGGAATGCCAATATATGAAGGAATTCAGTCTGACCCAAAATGGAACCAATGTTTTAACAAAGCAATGGCCAACATTTGTACCATAGAAATGAAGAGGATACTTGAAAAGTATAATGGATTTGGGGGAATATCTTTGTTGGTGGATGTTGGAGGTGGCATTGGGCAAAGTTTGAATATGATTATCAACAAGTATCCTTCAATTAAGGGTATCAATTTTGATCTACCCCAAGTGATTCTAAATGCTCCAACTTATCAAGGTATAGAGCAAATTGCAGGAGATATGTTTGAAAGTGTTCCAAAAGGTGATGCCATCCTATTGAAGGGTGTATTGCACAATTGGAGTGAGGAAGATTGCTTGAAAATCCTAAGTAATTGTTACAAATCTTTGCCACAAAATGGAAAAGTGATAGTTGTGGACTTCATAATGCCTGAAGTAATCCAAACAACAGAAGCTGATAAAATGGTTACAAGCTTTGACAATCTCATGTTTCTTGACAGTGGCAGAGAAAGAACTATGAAAGAATTCCAGGGTTTATGCATAAAATCAGGGTTTTCTAATTTTCAAGTTGCATGCCAAGCCCTCTCTGCTTTAGGAATAATGGAATTTTGTAAGATTCATTGA 1089 0.3848 MLLSCSPMVYTAVLNASLQLNLFDIISNINKEKAAAAAKAPFRGVSASEIASKLDTATKTQHPELSRRLDRMLCLLASYSLLNCSTRVSEDGSVERVFEVSLVGKYFVVNGDGNENDHGSVASFSAFMGHRKLVDAFLNFKDIILDCDKGLFMKTHGMPIYEGIQSDPKWNQCFNKAMANICTIEMKRILEKYNGFGGISLLVDVGGGIGQSLNMIINKYPSIKGINFDLPQVILNAPTYQGIEQIAGDMFESVPKGDAILLKGVLHNWSEEDCLKILSNCYKSLPQNGKVIVVDFIMPEVIQTTEADKMVTSFDNLMFLDSGRERTMKEFQGLCIKSGFSNFQVACQALSALGIMEFCKIH 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271898g00005 362 Gene3D - 9 189 IPR036388 -
Stsc271898g00005 362 Gene3D Vaccinia Virus protein VP39 171 349 IPR029063 -
Stsc271898g00005 362 PANTHER O-METHYLTRANSFERASE 11 343 IPR016461 GO:0008168
Stsc271898g00005 362 FunFam Caffeic acid 3-O-methyltransferase 1 107 - -
Stsc271898g00005 362 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 117 351 IPR029063 -
Stsc271898g00005 362 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 2 360 IPR016461 GO:0008168
Stsc271898g00005 362 Pfam Dimerisation domain 13 77 IPR012967 GO:0046983
Stsc271898g00005 362 PIRSF O-mtase 2 360 IPR016461 GO:0008168
Stsc271898g00005 362 SUPERFAMILY "Winged helix" DNA-binding domain 7 111 IPR036390 -
Stsc271898g00005 362 Pfam O-methyltransferase domain 140 341 IPR001077 GO:0008171
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271898g00005 Stsc-Chr271898 31771 34105 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271898g00005 6 360 Monolignol Biosynthesis Gene Families AT5G54160 43.575 2.92e-92 278
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271898g00005 - - mtr:11418328 501.516