Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271898g00002 ATGGGGGGTCATGAGAATGCAATGGGGTTTCATCATGGAAATGAGAATATTCTGACAAACAATGTTAATGTCTCAGAAATGGCTATGAGTTCTTCTATGTCATTGGCTAAGTCTGCTTCTTCTTCAGATGTTGTTGTGCCTAATAATAACCACCCTTTTCTTGCTTCTTCAACTTCTTGGGATCCAATTGTTTCCTTAAGCCAATCTCAAACTTTTGGAGGGTCATCAATGGTTACTACTCACAATAGTGATTTTGGGAATTCTTCATCTTTCCCCTTTGTTCAATATATGTCTGACTCAACAAATCTTGAGGGCATTATGGTCCATAAAATGCCATCTTTTGGGAGTGGAAACTTCTCAGAGATTGTTGGATCCTTTGGTCAAGAAGGGTCTTCTGATATAGTTAACATGAGCTATAGACCAAGAATTGCACCTAGTGGAAATCGAAGAAAGCGCTTGCTTGATCGTGATTCTTCTTTCAGTCCAAACAAGAATGCTGATGGTGATGAACTGAAAGACTCTCCAAGGAAGATCTCCGATGGTGCTAAAGAACACGAAAAGAAGGCGAAAGTCGACCAGAATGTGAGTGCGGATTTGCGTGGCAAGCAACCAGCAAAGCAATCAAAAGAAAACTCTCCAAGTGGAGAAGCTCCGAAAGAAAATTTCATTCATGTTAGAGCAAGAAGGGGTCAAGCTACAAACAGTCACAGCCTTGCAGAAAGGGTGAGAAGAGAAAAGATTAGTGAGAGAATGAGATTGCTTCAAGAACTTGTTCCGGGCTGCAACAAGATAACTGGCAAGGCAGTGATGCTGGATGAGATTATAAACTATGTTCAGTCTCTGCAGCAACAAGTTGAGTTTTTGTCCATGAAACTTGCCACAGTGAACCCGGAACTGAATTTCGACGTAGAGCGGCTCCTATCGAAGGAAATTCTTCAATCGCGCTTAGGACATGGAATCGCTGGATATGGTGTTGGTATCAGCTCCTCTCACCCATTCTCCAATGGAAGCTTTCAAGGAAACATGGCTGGCATGCCTAGTTCATCAACACAATTCCATCCGATGCCTCAGGCTGTTTTGGACCATGAGTTCCAAAATCTTTATGGAATGGGGTATGATCCTAATACAGCACTTGACAATTTGGGACCAAATGGAAGATTGAAAACAGAATTATAG 1176 0.4192 MGGHENAMGFHHGNENILTNNVNVSEMAMSSSMSLAKSASSSDVVVPNNNHPFLASSTSWDPIVSLSQSQTFGGSSMVTTHNSDFGNSSSFPFVQYMSDSTNLEGIMVHKMPSFGSGNFSEIVGSFGQEGSSDIVNMSYRPRIAPSGNRRKRLLDRDSSFSPNKNADGDELKDSPRKISDGAKEHEKKAKVDQNVSADLRGKQPAKQSKENSPSGEAPKENFIHVRARRGQATNSHSLAERVRREKISERMRLLQELVPGCNKITGKAVMLDEIINYVQSLQQQVEFLSMKLATVNPELNFDVERLLSKEILQSRLGHGIAGYGVGISSSHPFSNGSFQGNMAGMPSSSTQFHPMPQAVLDHEFQNLYGMGYDPNTALDNLGPNGRLKTEL 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271898g00002 391 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 229 299 IPR036638 GO:0046983
Stsc271898g00002 391 FunFam Basic helix-loop-helix transcription factor 228 300 - -
Stsc271898g00002 391 MobiDBLite consensus disorder prediction 148 195 - -
Stsc271898g00002 391 Gene3D - 228 302 IPR036638 GO:0046983
Stsc271898g00002 391 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 123 351 IPR024097 GO:0006355
Stsc271898g00002 391 SMART finulus 237 287 IPR011598 GO:0046983
Stsc271898g00002 391 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 231 281 IPR011598 GO:0046983
Stsc271898g00002 391 Pfam Helix-loop-helix DNA-binding domain 234 282 IPR011598 GO:0046983
Stsc271898g00002 391 CDD bHLH_AtBPE_like 221 306 - -
Stsc271898g00002 391 MobiDBLite consensus disorder prediction 139 219 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271898g00002 Stsc-Chr271898 6262 8911 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271898g00002 1 391 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G10120 42.752 2.86e-80 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Stsc271898g00002 HLH 4e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271898g00002 - - gmx:100794464 496.123