Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271897g00018 ATGGCATCCACTACTGTACATGCAGGTGAAGCCTCTTCTAGTTCATCAATCCAACGGCGACCACCAAGATCATGGAAGTATCACGTGTTCTTGAGTTTTAGGGGTCAAGACACTCGTACGGGATTCACTAGCCATCTCTATGCTGCTCTCCGCAGGAAGGGTATCACTACCTACAAAGATGACTACGACCTTCGCAAAGGTGATGTCATTTCAGATGAACTTCTCAAAGCAATTGAAGACTCCATGTTTGGTGTCATTGTTCTCTCACCAAACTATGCTTCATCCTCATGGTGCTTGGACGAGCTCTGTAAGATCCTTGACTGCAACAAAAACTTGGGGCAACATATCGTTCTGATATTCTATGATGTGGAGCCTGCTCATGTGAGGCACCAGAAAGGAACCTTCAGAGAAGCTTTCAAGAAACACGAAGAGAGAGAAGACAGTGAAAAGATTAAAAGATGGAAAGCTGCTTTAACACAAGTGGCCGGATATTCTGGTTGGAACCCAAAAGATTATAAGAATGATGCAACATTGGCGGAAAGCATTTCTCAAAGTATACATGAAATAATGATCCCAAAATTATTGCCATCTTCCAAGAAGAAGCTTGTGGGCATCGATTCAAGAGTGGAACAAGTGATTAATCACATTGGTAGTGGGTTGGACGATGTTCGTTTTATAGGCATATGTGGATTGGGTGGCATAGGTAAGACAACTCTTGCTAGAATTGTATATGAATCCCTCCAAAGTGAATTTAAAGTAGCTTGTTTTTTTGCCGATGTAAGAGAGAGATGTGAGAAAAATGGCATTCTTCAAGCACAAAAAGATCTTCTTGTCCATATCAATGGAAGCTCGAGTGAAATTGATAACAAGTATGATGGGAGGAGAATAATTCAGGCTTCTTTGTGTCATAAGAAGGTTCTTCTTGTTCTTGATGATGTAAATAAAGAAGAACAATTGAAGAATTTGGCTGAAGAACAAGATTGGTTTGGTCCTGGTAGTAGAATAATTATCACAACTAGAGACATGCGACTGCTAAGGATTCAAGATGCACGTGAAATTTACAATGTTGAAGGGTTGGGAGAAAATGAAGCCTTTGATCTCTTTTGTTTGAAGGCTTTTAAACAACGAAAGCCTGAAAAAGAGTATTTAGATTTATCTAAACAGGTGGTCAAATATTGTGCTGGTCTTCCATTGGCACTTGAAGTATTGGGTTCCCATTTTTATGGTAGATCTATTGAAGAATGGCATAGTGCTCTGGAAAAATTAAAGAGTTTTCCACATGTCGACATTTTTGAGGCGTTGAAAATAAGTTATGATGGTTTAGACTCCATGGAGAAGGATATTTTTTTAGACATTGCTTACTTTTTCAAATGA 1374 0.3923 MASTTVHAGEASSSSSIQRRPPRSWKYHVFLSFRGQDTRTGFTSHLYAALRRKGITTYKDDYDLRKGDVISDELLKAIEDSMFGVIVLSPNYASSSWCLDELCKILDCNKNLGQHIVLIFYDVEPAHVRHQKGTFREAFKKHEEREDSEKIKRWKAALTQVAGYSGWNPKDYKNDATLAESISQSIHEIMIPKLLPSSKKKLVGIDSRVEQVINHIGSGLDDVRFIGICGLGGIGKTTLARIVYESLQSEFKVACFFADVRERCEKNGILQAQKDLLVHINGSSSEIDNKYDGRRIIQASLCHKKVLLVLDDVNKEEQLKNLAEEQDWFGPGSRIIITTRDMRLLRIQDAREIYNVEGLGENEAFDLFCLKAFKQRKPEKEYLDLSKQVVKYCAGLPLALEVLGSHFYGRSIEEWHSALEKLKSFPHVDIFEALKISYDGLDSMEKDIFLDIAYFFK 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271897g00018 457 SMART till_3 26 164 IPR000157 GO:0007165
Stsc271897g00018 457 Gene3D - 23 189 IPR035897 -
Stsc271897g00018 457 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 27 456 IPR044974 GO:0006952
Stsc271897g00018 457 FunFam Disease resistance protein (TIR-NBS-LRR class) 23 191 - -
Stsc271897g00018 457 Gene3D - 190 354 IPR027417 -
Stsc271897g00018 457 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 183 452 IPR027417 -
Stsc271897g00018 457 PRINTS Disease resistance protein signature 300 314 - -
Stsc271897g00018 457 PRINTS Disease resistance protein signature 393 407 - -
Stsc271897g00018 457 PRINTS Disease resistance protein signature 225 240 - -
Stsc271897g00018 457 Pfam TIR domain 26 198 IPR000157 GO:0007165
Stsc271897g00018 457 Pfam NB-ARC domain 207 433 IPR002182 GO:0043531
Stsc271897g00018 457 Gene3D - 358 442 IPR042197 -
Stsc271897g00018 457 SUPERFAMILY Toll/Interleukin receptor TIR domain 17 167 IPR035897 -
Stsc271897g00018 457 ProSiteProfiles TIR domain profile. 25 190 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271897g00018 Stsc-Chr271897 126475 130270 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271897g00018 203 457 WRKY Transcription Factor Family AT5G45050 36.719 7.08e-42 157
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271897g00018 - - ahf:112769348 632.869