Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271896g00003 ATGATTGTGAGCCAGAATATGGTGGCGGAAGCGGAGATCATGTGTCAGCAGAGAATTCCGGTGCTTGATGTCAAGTATCATCTCTGCGTAACGCAAGAACAAGCCGTCGCCGCCAATGTTGTTCCTATCTTTAACCAAGTTCGAGTCTCGCCCGAATCTATGGAAATGGAATCGGCTATGAGTTGCTCTGAGTTGCTTAAAGATACCCTTATGGAGACTCCTGCTACCACATTTACTCCAATTGTTCGTTCTGGAAGCTGTGCTGATATTGGACCGAGGGGATCCATGGATGATGAGCACATTCAAATAGATGATCTAGCTGCCCACCTTGGATTTGTGTTCAAATACCCTATGCCGAGCGCGTTTTATGCAGTTTTTGATGGGCATGGAGGGCCTAATGCAGCTGCTTTCATTAAGAGGAATGCAATTAGATTATTTTTTGAAGACGCCAAAATGCTGCAATCATATGATACAGATGCACTTTTCTTAAAACGGTTGGAGGATTCTCATAGGAAAGCATTCTTAGGGGCAGACCTTGCCTTGGCTAGTGAACAGAGTGTTGGTGGTACTTGTGGGACAACTGCGTTGACTGCCCTTATACTTGGAAGGCATTTGCTGGTTGCCAATGCTGGTGATTGTCGAGCAGTTCTTTGTAGGCGAGGAGTGGCAGTTGAGATGTCTCATGATCATAGACCGAGTTATTTACCCGAACGGAGGAGAGTGGAAGAGTTGGGTGGTTTCATCTATGATGGGTATCTCAATGGTGATCTTTCTGTCACCCGTGCACTTGGTGATTGGAAGTTGAAGTATCCAGTTGGTACTGCATCGCCTCTTATTGCCGATCCAGATATTCAAGTGGTCACATTGACAGAGGAGGATGAGTTCTTGATCATTGGTTGTGATGGTATTTGGGATGTAATGTCAAGCCAGGAAGCAGTTAGTTTCGTGCGGCGAGGATTGAGAAGGCATGATGATCCACAGCAATGTGCCAAAGAGCTAGTTAAGGAAGCATTGCGCCTCAATACAACAGATAATCTTACTGTGATTGTTGTATGTTTGTCCACGGTGGAAAAGATTGTTGAATCTATCCCACCCCATAGGCGAAGATTCAGAGCTTGCTCACTGTCTGAAGAGGCCCGAAGTAGATTGAAGAGCTTACTTGAAGGAAATTAA 1173 0.4535 MIVSQNMVAEAEIMCQQRIPVLDVKYHLCVTQEQAVAANVVPIFNQVRVSPESMEMESAMSCSELLKDTLMETPATTFTPIVRSGSCADIGPRGSMDDEHIQIDDLAAHLGFVFKYPMPSAFYAVFDGHGGPNAAAFIKRNAIRLFFEDAKMLQSYDTDALFLKRLEDSHRKAFLGADLALASEQSVGGTCGTTALTALILGRHLLVANAGDCRAVLCRRGVAVEMSHDHRPSYLPERRRVEELGGFIYDGYLNGDLSVTRALGDWKLKYPVGTASPLIADPDIQVVTLTEEDEFLIIGCDGIWDVMSSQEAVSFVRRGLRRHDDPQQCAKELVKEALRLNTTDNLTVIVVCLSTVEKIVESIPPHRRRFRACSLSEEARSRLKSLLEGN 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271896g00003 390 SUPERFAMILY PP2C-like 77 354 IPR036457 -
Stsc271896g00003 390 ProSiteProfiles PPM-type phosphatase domain profile. 83 353 IPR001932 -
Stsc271896g00003 390 SMART PP2C_SIG_2 98 353 IPR001932 -
Stsc271896g00003 390 FunFam Probable protein phosphatase 2C 22 67 356 - -
Stsc271896g00003 390 ProSitePatterns PPM-type phosphatase domain signature. 122 130 IPR000222 GO:0043169
Stsc271896g00003 390 CDD PP2Cc 82 353 IPR001932 -
Stsc271896g00003 390 PANTHER PROTEIN PHOSPHATASE 2C 71 351 IPR015655 GO:0004722|GO:0006470
Stsc271896g00003 390 SMART PP2C_4 73 351 IPR001932 -
Stsc271896g00003 390 Pfam Protein phosphatase 2C 91 345 IPR001932 -
Stsc271896g00003 390 Gene3D - 67 359 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271896g00003 Stsc-Chr271896 52845 55105 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271896g00003 1 389 PP2C-type Phosphatase Gene Family AT1G48040 58.586 5.85e-152 432
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271896g00003 K14803 - gmx:100798957 619.387