LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc271895g00030	ATGGCAAGTTTTGCTGGATCCTCTCAGATCTCTCCTAAAGCAAAAACGTACGGTGTATTTCTCAGCTTCCGAGGGGAGGACACCCGTGACAACTTCACCTGCCATCTTTGTACCGCTCTCGTCGATAGAGGAATCAAGGTATACCGAGATGATCAACTTGACAGAGGAGGAGATATTTGGGCACAACTTTGTGGAGCAATCGAGGATTCATACATATCAGTGGTGGTTTTCTCTCAAGACTTTGCTTCCTCCAAATGGTGCTTGGAAGAACTGGTCAAAATAATGGACTGCAGAAGAGTAATGGACCAGGTTGTTATACCTGTCTTCTACCAAGTTTCTCCAACGAACGTACGGTTTCAGAAAGAGAGTTTCAATAAATCATTTGCCAAGCATGAATTGAATCTCCGTAAAGATGCATACAAACATAAAGAGAAAGTTCTTAGCTGGAGAAAGGCTCTAGAGGAGGCGGCCAATCTATCTGGATGGTCCTCTTCAAGTCGTGGCATAAGGGACGACTCTGAACTCATCCAACACATTGTGAAAGATGTTTTGAAAAAGCTGGAACTGAGACGTTCCAATTTAACAGAAGGCCTCGTTGGAATTGAGAAAACACAGAAAGAGATTCAGTCATTGCTGGAAAAAGAGCAAGTAATTGGAATTTGGGGTCAAGGTGGAATCGGAAAGACCATCATTGCTAAAGTCATGTTTAACAAACTCTGTTGCCAATATGATTGTGTTTGCCTCATGGAAAATATATCCAAGGAAGCAGAAGAGCAGGGACTACCACGTTTATGTCGTAATCTTTTCTTAGACCTACTAAAGGAAGATGATCCCACACATAATAATGTTGCGAGCCTGGAAACTAAGAAAGTTCTCATTGTTCTTGATGGCGTGGAGGGGTATGACCAATTAGAATACCTATGCCAACGAACACATTTGCTTAGTTACCTAAGAGAAGATAGCAGACTCATTATCACATCAAGAAATAGGCATGTTCTTTCCAACATAGCTAATGATAAGATATACGGGGTCAAGATATTGGACACCAAAGAATCTCTAAAGCTTTTTAGCCTAAAAGCCTTCAAGAATAGCCAGCCTAAGAAGGGATACGAGCAACTCTCGAATCAAGCACTAGAATATGCAGGAGGCATTCCTTTAGCTCTTCATGTATTGGGTTCACATCTTTGGAACAGATCTATAGAGTTCTGGGAAAGTACTCTTAGAAAACTGAAAAACTCCCCTCATAAGGATATCCAGAAGGTGTTAAGGGTGAGCTATGACGGGTTAGATGATCTAGAGAAGAAGATATTTCTAGACATCGCGTTCTTCTTCAGAGAAGAGAATAAAAACCGTGTTGTGAGGATTCTAGATGCTTGTGGTTTCGAACCCAACAGTGGGATCGTCGTACTTGAAGATAAAGCCTTGATAACCATTTCATCATTTGACAAAAAAATACAAATGCATGACTTGTTGCTAGAAATGGCTTTGGAAATAGTGCGTGAACAAAGCAGTGGAGGACGCAGCAGATTGAGGGATGCTAAAGAAATTTGTGATGTAATTAGAGACAACACGGGAACTAATGCAGTTGAAGGCATAATGTTGGACACATCTCAGATAGATCAAGATTTACATTTTAGTTCAGACATCTTCAAAAAGATGAAAAAGATACGATTTCTGAAATTGTATATCCCAAAAGGTGAAAGTTCCAATAATTACCTACCTCATGGCCTTGAACAATTTCCTGATGAATTAAGGTACCTTGAGTGGCACGGGTATCCTTTGAAGTCTTTTCCGCTAAGATTTTGTTCTAAGTTGCTTGTTGAGATTCACTTGTGCTACAGCGATGTTGAAGTACTTTGGATGGAGGGAAAGATTGCAAAGGATCTTAGCAATCTAGAAGTAATTGACCTGAGTGACTGCAGTAAGTTGGAGAGCCTTCCAGATTTGTCTAATGCAAAAAAGCTTAGATGGGTGAATCTCTCCGGTTGCAAGAAGTTGCGTTATCTTCATCCATCGGTTCTATCTGCTGGTAAACTTGTTACTTTGCTACTGGACAGGTGCACGAGTCTCATTCAGGTTAAAAGTGAGGAGACCTTAGAATCTCTAAAGAAGATCAGTGTCAATGGCTGCCCGAGCCTCATGGAATTCGACGTGCAGTCGGCTTTAATTGAGAGATTGGATCTAAGCAAGACAGCAATCAGAACACTGCACACATCCATTGGGGACATAAAGAATCTCAAGTCCCTCAATCTAGAAGGTTTAAGACTTGAGCGTCTTGTGAATGAGTTGTCCAAATTGAAATCCCTCGAGTATCTTAATCTTTCTCGCAGTGGACTAGAGTTTGACAAAGACCAGCTACGTGTCCTGTTCGATGGCTTAAAATCGTTAGAGAAGCTACATTTGAAGCATTGTAGTAACTTGTTTGAGCTCCCGGACAACATCCATGCCTTATCTCAATTAAATGAATTAAGGCTTGATGGGAGCAGCATAACATCTCTACCAGCAAGCATCAAGAACCTTACCAGGCTGGAAATTTTGTCCTTGGAGAATTGCAATAATCTCGTGAGCGTGCCAGAGCTTCCACCGTTCATCAAGGACTTCAATGTCAATAGCTGCGATTCATTGAAAAGAGTATCAAGTTTAAGGAGTCTTGCAACCAAAATGATAGGAAAAATGAAACGTATTTTGATGAAGGACTGCTTGAAACTCGAAAACAGTGATTCAATTATACAAGACCTGCACTTAACAATGGCGAGTGCTGCATTTAACAATGTGCTAGTAAGATCATTCGACAATAGACTCCACAGTTTCAATTACAACAAGGTAGAGGTTTGCCTACCGGGGAAGAGCGTCCCAAGGCAGCTGAAGAATCGAACAACAGAGTCCTCCGCCATTATTATAATTAGAGTTCCAAACCCTAGCTCCGTGATGGGATTTCTACTCTCAGTGGTTCTCTCTCCATCCTCTGAAGCGAAACAAGGCATTGCTGACTCTCACATTTACTGTAGATGTTACTCAGCAGATGGCACAGAAATAGGTGATCGCACAACTTGGTCTTCAGCGATTAACAAATTGAATTCGGAGAACTTGTTTGTTTGGTATGACCCCTACTTCTACGATGCCATTCTCAAGACTCGCGAAACACACGTGTCTTTCGAGTTTTCTACTGACCATGGATTGGGAGTCATAAAAGACTGTGGTGTCCGCGTAATAGACGCCTCTGAGTTTCATGGTGTTATAAGGGGAATGGATTTGGAGTGGCATAAAAAAGTGGAGTTGGGAGTGAAGTTAGGCTTAGCGTTAGACTTACAAGTACAACGGCAGGTGGAGTGTGAGGTGGATTTGGGTAATTTACTGTTTGCCTTAGAGTATAATTGGAAGTTGAACAAGAAAATGGCATCGGAGATTCAATCGCGCCGTAATGAAATGGTGAAGATTATACTTCCTCAGTCCGTCTATCCACCGCGTCCTGCTATCAACACCATCCCGCATGGCTTCGAAGATATCCTCGACTAA	3516	0.4172	MASFAGSSQISPKAKTYGVFLSFRGEDTRDNFTCHLCTALVDRGIKVYRDDQLDRGGDIWAQLCGAIEDSYISVVVFSQDFASSKWCLEELVKIMDCRRVMDQVVIPVFYQVSPTNVRFQKESFNKSFAKHELNLRKDAYKHKEKVLSWRKALEEAANLSGWSSSSRGIRDDSELIQHIVKDVLKKLELRRSNLTEGLVGIEKTQKEIQSLLEKEQVIGIWGQGGIGKTIIAKVMFNKLCCQYDCVCLMENISKEAEEQGLPRLCRNLFLDLLKEDDPTHNNVASLETKKVLIVLDGVEGYDQLEYLCQRTHLLSYLREDSRLIITSRNRHVLSNIANDKIYGVKILDTKESLKLFSLKAFKNSQPKKGYEQLSNQALEYAGGIPLALHVLGSHLWNRSIEFWESTLRKLKNSPHKDIQKVLRVSYDGLDDLEKKIFLDIAFFFREENKNRVVRILDACGFEPNSGIVVLEDKALITISSFDKKIQMHDLLLEMALEIVREQSSGGRSRLRDAKEICDVIRDNTGTNAVEGIMLDTSQIDQDLHFSSDIFKKMKKIRFLKLYIPKGESSNNYLPHGLEQFPDELRYLEWHGYPLKSFPLRFCSKLLVEIHLCYSDVEVLWMEGKIAKDLSNLEVIDLSDCSKLESLPDLSNAKKLRWVNLSGCKKLRYLHPSVLSAGKLVTLLLDRCTSLIQVKSEETLESLKKISVNGCPSLMEFDVQSALIERLDLSKTAIRTLHTSIGDIKNLKSLNLEGLRLERLVNELSKLKSLEYLNLSRSGLEFDKDQLRVLFDGLKSLEKLHLKHCSNLFELPDNIHALSQLNELRLDGSSITSLPASIKNLTRLEILSLENCNNLVSVPELPPFIKDFNVNSCDSLKRVSSLRSLATKMIGKMKRILMKDCLKLENSDSIIQDLHLTMASAAFNNVLVRSFDNRLHSFNYNKVEVCLPGKSVPRQLKNRTTESSAIIIIRVPNPSSVMGFLLSVVLSPSSEAKQGIADSHIYCRCYSADGTEIGDRTTWSSAINKLNSENLFVWYDPYFYDAILKTRETHVSFEFSTDHGLGVIKDCGVRVIDASEFHGVIRGMDLEWHKKVELGVKLGLALDLQVQRQVECEVDLGNLLFALEYNWKLNKKMASEIQSRRNEMVKIILPQSVYPPRPAINTIPHGFEDILD	1171

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Stsc271895g00030	1171	ProSiteProfiles	TIR domain profile.	15	187	IPR000157	GO:0007165
	Stsc271895g00030	1171	Gene3D	-	346	430	IPR042197	-
	Stsc271895g00030	1171	PRINTS	Disease resistance protein signature	217	232	-	-
	Stsc271895g00030	1171	PRINTS	Disease resistance protein signature	381	395	-	-
	Stsc271895g00030	1171	PRINTS	Disease resistance protein signature	285	299	-	-
	Stsc271895g00030	1171	PRINTS	Disease resistance protein signature	627	643	-	-
	Stsc271895g00030	1171	FunFam	Disease resistance protein (TIR-NBS-LRR class)	13	189	-	-
	Stsc271895g00030	1171	SUPERFAMILY	Toll/Interleukin receptor TIR domain	7	162	IPR035897	-
	Stsc271895g00030	1171	FunFam	Disease resistance protein (TIR-NBS-LRR class)	348	430	-	-
	Stsc271895g00030	1171	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	192	440	IPR027417	-
	Stsc271895g00030	1171	SMART	till_3	16	159	IPR000157	GO:0007165
	Stsc271895g00030	1171	Gene3D	-	14	183	IPR035897	-
	Stsc271895g00030	1171	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	17	717	IPR044974	GO:0006952
	Stsc271895g00030	1171	SUPERFAMILY	L domain-like	486	859	-	-
	Stsc271895g00030	1171	Gene3D	-	184	343	IPR027417	-
	Stsc271895g00030	1171	Gene3D	Ribonuclease Inhibitor	500	720	IPR032675	-
	Stsc271895g00030	1171	Gene3D	Ribonuclease Inhibitor	721	919	IPR032675	-
	Stsc271895g00030	1171	Pfam	TIR domain	17	200	IPR000157	GO:0007165
	Stsc271895g00030	1171	Pfam	NB-ARC domain	208	429	IPR002182	GO:0043531

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc271895g00030	Stsc-Chr271895	169685	174511	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc271895g00030	14	880	WRKY Transcription Factor Family	AT4G12020	31.655	8.13e-92	323

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc271895g00030	-		-	aip:107614919	1429.46