Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271895g00029 ATGGCCAAGTCATGTGCAGTCTCTCAAAAAAGGCACGACGTATTCATCAGCTTCCGAGGGGGGGACACACGCATCGCCTTCACTAGCCACCTTCACACTGCTCTCACCAACAGGGGAATCGAGACATACATAGATTACCGACTTCGAACCGGGGATGATATCTGGGACTCACTTTGTGAAGCAATCCAGGAATCACGTATATCCATCCTCGTTTTCTCTAAAGACTACGCTTCTTCAAGATGGTGCTTGAAAGAACTGGTTCAAATCATGAAATGCAGAAAAGAACAGGGGCAGGTTGTTATTCCTGTGTTCTGCAAAACGGATCCTTCAAAAATTCGGGATCACAGCGAGATTTCCAAGAAACTTAGAAAGAGAAATGATGAATTGGAAGTGCGCCGATGGATGGATACTCTAACTGAGGCCGCAGATCTATCTCCATCCTACTCACTAAGCTCTGACAATAGGGACGAGTCTGTACTCATCAAGGATGTTGTCAAACATGTTTTGCAAAAGCTGCTGGAACTTAGATACTCCAGTATCATAGAAGGGCTTGTTGCAATTGATGAAGCTTGTAAAGACATTAAATTATTAATGAAAAATGCTCAAAGAATTGGAATTTGGGGTATGGGAGGAATAGGAAAAACGACGATTGCTGAAGTCGTGTTTGCCATCCTTTCTCCCCAATATGACAATGTTTGCTTTTTGAAAAATATATCAAAGGAATCAAAGCACGAGGAACTAGCATATTTTTGTAACAAGCTCTCAAAACTACCAAAGCAAATTAAACTTGTACATGAGGTTGTAGGAACTACCCACACAACGGCGAGAATGAACAGTAACAAAGTTCTCATTGTGCTTGATGATGTGGATACACTTAAGCAATTAGAGAACTTGTGTGAAGAGTCTGAAGTATTCAATAATCTATCAGAAGATAGCAGAGTCATTATTACAACAAGAAATAGGCGTTTGCTTATTGGCAATGTTGATGAGATATATGAGGTCAAGACATTGGACCCCAAAGAATCACTAAAGCTGTTTTGCCTTAAATCCTTTAGTGAAAGCCATCCCAAAGAGGGATATGAGCAACTCTCAAAACAAGTGGTAGAATATGCAGGAGGCATTCCCTACGCTCTAAATGCATTGGGTTTATATCTCCACGACAGGTCTATAAATTTTTGGGAGAGTGCTTTGAGAAAACTTAGAAAATCTCCTAACGTAGACATTCAACGCATGTTAAGAGAGAGCTATGATGGATTAGAGCCTTTGGAGCAGAAGATATTTCTAGACATTGCATTCTTCTTCACAGAAGAAAAGAAAGACCTTGCGATAAGGATACTGGATGCTTGTGGTTTTGAAGCAAGTAGCGGGATAGACATACTTGAAGATAAATCTTTGATAACCATTTCATCTTATGACAATAGAATTCAAATGCATCACTTGTTGCGTGAAATGGCTATGGAAATAGTGCACCGAGAATCTGAATTGAAACTTGGAGGATGCAGTAGATTGAGGGATGTTGAAAGCATTCATAAAGCACTTGAAAACAACACAGGAACTAATGCAGTTGAGGGCATAATTTTGGACTTGTCTCAGATAAAAGATTTACATTTGAGTTCAGACATATTTGCAAAGATGAATAATATAAGGTTTCTAAAGTTTTATATTCCGGAAGGTGAGAGTTCCAGTAATAAGTACCTATCAGAAGGCCTTGAACAATTCCCTAAAGAATTAAGGTACTTAGAATGGGATAGATACCCATTGAAGTCTTTTCCACCATGTTTTTGTTCGGAGTTGCTGGTTGAGATTCACATGCACCACAGCGAAGTTGAAGAACTTTGGCAGGGTCTGGATGCAAAGGATCTTAATAATCTAGAAGTAATTGACCTGAGTGAATGCAGAAAGTTGGCGAACCTTCCAGATTTGTCTAACGCATCAAGACTTAAATGGGTGAATCTCTCCGGTTGTGAGAAGTTGTGTCATCTTCATCCTTCGGTTCTATCTTCTTGTACGCTAGTTACTTTGATACTGGACAGATGTAAAAATCTCATTCAGGTTAAAAGTGAGAAGCGCTTAGAATCTCTAAAGAAGATCAGCGTCAATGGCTGCTCAAGTCTCAAAACATTAGATCTAAGCAAGACAGCAATTGAAACATTGCACACATCCATTGGGTATCTAAACAATCTTAGGTCACTCAATCTAGAAAGTTCAAGACTAGAGCACCTTCCAAATGACTTAACTGGCTTGAAATGTCTTGAGTATCTTAATCTTTCTTGCAATGGACTACTAGATTGTAGTAAATTGTTTGAGCTCCCTGACAACATTAGTGCTTTATCAGAACTACATGAACTAAGGCTTGATGGGAGCAGTATAATTGTATTGCCAGCAAGCATCAAGAACCTTCAAAAGCTAGAAACTCTGTCCTTGGAGAACTGCAATCAGCTTCGCAGTCTGCCAGAGCTTCCACCATCCATCAAAGAGCTTTACGCCAATAACTGCAGCTCATTGGTATCAGTGTCAAATCTAAAGAATTTGGCTACTAAGATGATAGGAAAGGGGAAATACATTTCTTTCAAGGATAGCTTCAAACTAGATAACTATTCACTCTATTCCATCATGGAAAGCCTCTGTTTGACAATGATGAGTGCTGCATTCCACAATGTGTTAGTAAAAGCGTTCGACATGAATGTCCACAGTTATAACTATAATAGCGTTTGGGCTTGTCTACCAGGCAGTAGTATCCCAAGGCACTTCACAAATCGAACTACAGGGTCATCCATTACTGTTAGACTTCCGAATCCTGCTTCCGGGTTGGGACTCGTTCTTTGTGTGGTTCTCTCTCCATCTCTTGGAGTGAAGAAATTTGATGCTAAAATCCAATGCCAGTGCTACACCGCAGATGGTACACATATAGGGAATGACTCTGGATGGTATTATTATGATGACATTCCAAACTTGAATTCAGATACTGTGTTTTTCTGGTACGATCCGTACTTCTCTGTCAGCATTCTCAGGACTCATGAACAGCAAGTTTCTTTCAAGTTTACTACTTCTGCAACAGAAGGAGATGGGATGGTTGTGACAAAAGGGTGTGCTGTCCGCCTAATACGTCGCTCGGAATTCGACAGTGTTTTAGGGGAAATGGAGTTGGAATATGAGAAGAAGGTGGAGTTGGGAGTGAAGTTAGGACTGGCTTTAGACATGAAGCCAACAGAGTCAAAGCCAGGTATGCATAACTTGTTTTTTGCGTTAGATTATGGATGTGTGTTAGAACCGTCAATGAAGTTTGAGCTTGATTTATGGCGGAGAGCAGTGGCAGCAATAATTGAGGAACAAAGGCAAAAATATAGCAAGTTCATTTTTCCACCCCGATTAACTAGAATGTGGAAAATTTGCAGTCTTGGCTTGCAAAATGCCTTGTTCCCATAG 3426 0.4022 MAKSCAVSQKRHDVFISFRGGDTRIAFTSHLHTALTNRGIETYIDYRLRTGDDIWDSLCEAIQESRISILVFSKDYASSRWCLKELVQIMKCRKEQGQVVIPVFCKTDPSKIRDHSEISKKLRKRNDELEVRRWMDTLTEAADLSPSYSLSSDNRDESVLIKDVVKHVLQKLLELRYSSIIEGLVAIDEACKDIKLLMKNAQRIGIWGMGGIGKTTIAEVVFAILSPQYDNVCFLKNISKESKHEELAYFCNKLSKLPKQIKLVHEVVGTTHTTARMNSNKVLIVLDDVDTLKQLENLCEESEVFNNLSEDSRVIITTRNRRLLIGNVDEIYEVKTLDPKESLKLFCLKSFSESHPKEGYEQLSKQVVEYAGGIPYALNALGLYLHDRSINFWESALRKLRKSPNVDIQRMLRESYDGLEPLEQKIFLDIAFFFTEEKKDLAIRILDACGFEASSGIDILEDKSLITISSYDNRIQMHHLLREMAMEIVHRESELKLGGCSRLRDVESIHKALENNTGTNAVEGIILDLSQIKDLHLSSDIFAKMNNIRFLKFYIPEGESSSNKYLSEGLEQFPKELRYLEWDRYPLKSFPPCFCSELLVEIHMHHSEVEELWQGLDAKDLNNLEVIDLSECRKLANLPDLSNASRLKWVNLSGCEKLCHLHPSVLSSCTLVTLILDRCKNLIQVKSEKRLESLKKISVNGCSSLKTLDLSKTAIETLHTSIGYLNNLRSLNLESSRLEHLPNDLTGLKCLEYLNLSCNGLLDCSKLFELPDNISALSELHELRLDGSSIIVLPASIKNLQKLETLSLENCNQLRSLPELPPSIKELYANNCSSLVSVSNLKNLATKMIGKGKYISFKDSFKLDNYSLYSIMESLCLTMMSAAFHNVLVKAFDMNVHSYNYNSVWACLPGSSIPRHFTNRTTGSSITVRLPNPASGLGLVLCVVLSPSLGVKKFDAKIQCQCYTADGTHIGNDSGWYYYDDIPNLNSDTVFFWYDPYFSVSILRTHEQQVSFKFTTSATEGDGMVVTKGCAVRLIRRSEFDSVLGEMELEYEKKVELGVKLGLALDMKPTESKPGMHNLFFALDYGCVLEPSMKFELDLWRRAVAAIIEEQRQKYSKFIFPPRLTRMWKICSLGLQNALFP 1141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271895g00029 1141 ProSiteProfiles Leucine-rich repeat profile. 802 824 IPR001611 GO:0005515
Stsc271895g00029 1141 FunFam Disease resistance protein (TIR-NBS-LRR class) 8 174 - -
Stsc271895g00029 1141 SUPERFAMILY "Winged helix" DNA-binding domain 407 495 IPR036390 -
Stsc271895g00029 1141 Gene3D - 8 172 IPR035897 -
Stsc271895g00029 1141 ProSiteProfiles TIR domain profile. 10 172 IPR000157 GO:0007165
Stsc271895g00029 1141 SUPERFAMILY L domain-like 526 843 - -
Stsc271895g00029 1141 SMART till_3 11 144 IPR000157 GO:0007165
Stsc271895g00029 1141 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 12 709 IPR044974 GO:0006952
Stsc271895g00029 1141 Pfam NB-ARC domain 195 418 IPR002182 GO:0043531
Stsc271895g00029 1141 Coils Coil 112 132 - -
Stsc271895g00029 1141 ProSiteProfiles Leucine-rich repeat profile. 750 771 IPR001611 GO:0005515
Stsc271895g00029 1141 Gene3D Ribonuclease Inhibitor 686 851 IPR032675 -
Stsc271895g00029 1141 SUPERFAMILY Toll/Interleukin receptor TIR domain 3 144 IPR035897 -
Stsc271895g00029 1141 Gene3D - 173 330 IPR027417 -
Stsc271895g00029 1141 Pfam TIR domain 12 176 IPR000157 GO:0007165
Stsc271895g00029 1141 PRINTS Disease resistance protein signature 203 218 - -
Stsc271895g00029 1141 PRINTS Disease resistance protein signature 619 635 - -
Stsc271895g00029 1141 PRINTS Disease resistance protein signature 371 385 - -
Stsc271895g00029 1141 PRINTS Disease resistance protein signature 276 290 - -
Stsc271895g00029 1141 Pfam Leucine rich repeat 704 761 IPR001611 GO:0005515
Stsc271895g00029 1141 Gene3D Ribonuclease Inhibitor 458 679 IPR032675 -
Stsc271895g00029 1141 Gene3D - 336 420 IPR042197 -
Stsc271895g00029 1141 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 169 430 IPR027417 -
Stsc271895g00029 1141 Pfam C-JID domain 908 1038 IPR045344 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271895g00029 Stsc-Chr271895 164873 169232 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271895g00029 8 806 WRKY Transcription Factor Family AT4G12020 32.321 2.12e-94 330
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271895g00029 - - aip:107614919 1211.05