Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271895g00028 ATGTTGTCTTCTAGTACGACAGAGTACGATGTATTTATTAGCTTTAGAGGTGAGGATACCCGCAAAACCTTCACTGGCCGTCTGTTTAACGCTCTGAAAGACAGGGCAATCCGTGTATACATGGATCGTCTTCTCAAGGGAGGAGATGAAATCTGGCCAACACTCGAGAAAGCCATTGAGAACTCGCTAATGTCCATCGTGGTTTTCTCAGAAAACTTCGCCACCTCCAAGTGGTGCTTGGAAGAGCTAGTCAAGATTGTCCAATGGAGGGATCATCACGGTCAAGTTGTTATACCGGTGTTCTATAGAACAGAGCCGAGAGATGTACGGAGCCAGAGGGGGAGCTATGAGAAGGCGTTTGCTAAATACGAGAGAGAAGAGAAGGAATCCAACAGAGAGAAGATAAGCAAGTGGAGGCAGGCTCTCAAGGAAGCAGCTAATATATCTGGCTGGCATTCCACACACTATGAGGATGATGATGAACTCGCCAGAAAGGTTGTAAAAGATGTATTGGAAATGCGTATCCTAAAGCATCCCAATATACCAACAGGCTTGGTTGGAATAAAACAAATTCGTAAAAGTATTAAATTCAAGATGAAGCAACACGGAGTAATTGGAATTTGGGGTATGCCAGGAATAGGGAAGACAACCATAGCTAAAATGTTATTTGCAAAATCCTTTCCTCATTATGACTATGTTTGCTATGCGGAAAATGCAAAAGAATACACTCCTCAAAGACTTCTCTCGGAGCTACTAAGGGAACAAATTTCCACTGATGAGGCAGGATTCGTCAACACTTTGAGCCGCCTTAGCAATAGGAAAGTTCTCATTGTTCTCGACAATGTCAAGGAGTATGATCAAACATTGTTAGAAGCAGTGTGCGAAGGATACAAGAGCCACAGTCGAGACAGTAAACTTATTATAACAACCACAGATAAGGATTTGCTTGAAAAGAGAGTTGAGTGGACATTTGAAGTCAAACAATGGACCGATTCAAAATCTATAGAGCTTCTTAGCCTCAAAGCTTTCGAGGAAAGAATCCCTCCAAAGCCTTTCGAGAATCTGGTAAATATGGTTGTTAAGTATGCTGGGGGAATTCCATTAGCTCTCAACGTTTTGGGTTCATATCTTCGACACAAAAGCATTCAGTTCTGGGAAAATACTTTGAAAAAGCTCCAGAAGCATCTTCATCAGGGCATTGATATTGCCTTTAGAAAAATTTATGATGAACTGGACAAGCCAGACAAGGAGATATTTCTTGATATTGCATTCTTTTTCCATGGCGAAAAGAAAGATCTTGTCTCAAGCATATTAGAAGCATGTAATTTCTCAGCAATAAATGGAATAGAGGTCCTTCATGATAAAGCAATGATTACTACTATTCCATTTAAAGAAACAATCGACATGCATGGCTTGCTAAGGGAACTGGCTTACAAGGTCGTACACGAGGAAAACAGTAAAGACCCTAGAAAACGTAGCAGATTGAGGGATACTCAGGACATTTGTGACGTACTCAAAGAGAACAAGAAATCGCTTGATGCAATTGAAGGCATAATATTAGATTTGTCTCAAATTAAGAACATGCATTTGAGTCCCGATGCATTTAAAAGGATGAATAAGTTGAGATTTCTAAAATTCTATATCCCTTCCAATCAGATTTCTGGTAAAATGGTCCTTCCTAAAGACCTTGAGCCATTTTCTGATAAACTAAGGTACTTCGAGTGGCATCAGTACCCTTTCGTTTCTCTTCCACCAAGTTTTTGTGCTAAGTTACTTGTTGAGATTCGCATGCCTCACAGCCATGTCAAGAGACTTTGGGAGGAGAAGCAGGAACTTGAGCATTTAGAAGGGATCGACTTAAGTGAATGCAAAGAGTTAGAAGAGCTTCCAGATTTGTCTGAGGCTAAAAGACTCAAATGGGTGAATCTCACCGGTTGTGAGACTTTGACTATTCTTCCTTCATCTGTTTTTTCCTCAAACACACTTGTTTCTTTGATATTGGATAGGTGCACAAATTTGCAGTGTGTTAAGGCCAAAGGGCATCTGAATTCACTGCAGTACATAAGTGTCAAAGGATGCTCAAATCTCACAGAATTTGCAGTGTCATCAGATTTGATAAAAAACTTGGATTTGAGTTACACAAAGATCGAAGAGCTGGACAAATCAATCGGGAAATTACAGAAGCTTGAATCCCTCAATCTAGAAGGATCAAGAGTTAAGCATCTTCCAAAGGTGCTATCGGCACTGAAATTGCTTAAGGAGTTGAAGCATTCATACAATGGACTAGAAATTGACAAGCAGCAGCTGCAAGACCTGTTTAACAGCTTACACTCTCTTCAGATACTACATTTGAAGGATTGTAAGAACTCATTTGAATTCCCCGACAACATCATAGCCTTATCAAAATTGCGCGAGCTAAGGCTAGATGGAAGCTATGTGACCAGGCTACCTGCAACTATCAAGGGTCTTCAAGAGTTGGAAATTTTGTCCCTAGATAATTGCATTTATCTTGAGACACTGCCGGAGCCTCCATCTTCTATCAAGGAGTTCTCTGTCGTTAACTGTAGCTCATTGTCTGTAGCACATCTAAACACTCTGGCAACAAAGATGGTGGGAAAGACAAAACGCATCTCATTCAATAATAGCTTGACATTGTCGTCTGGAGACATATTGCATTCAATCATGGAAAGCATCCATTCAACAATGATGAGTGCTGTATCTAACAATGCGACGGTAAGAAGCTATGGAACAGATGTCCATAGCTACAATTACAATAGTGTGGAGGTTTCTTTGCCAGGAGACACAATCCCGGAGCAATTTGCATATAAAACGGAGAAATCCTCCTCCATAACAATTGAACTCCCTGACTCTCTTTCCAACTCCATTGGCTTTATCTATTCAGTGGTTCTTTCACCGCGTCATGGAACGAAGAAGCACCGTGCCAAAATCCGATGCCAGTACAGCTTTGCAGGAGGCACAAATTCTTCTTGGGAGGACATAACCATAAGTGAATTGAATTCTGATCATTTATTTATATGGTATGATCCTTTCCACACTGACAAAATTCTTGGACAAGATAAGCCTAGTTTTCATCTTGAGTTCAGTGTTGTTGCAACTGACACCGGGGAAGTTGATGACTCCATCATTGTTAAGGAGTGTGGTGTTCAGATCATAAATGAATCAGAATGGCAGATATTCTCACAAGAATTTGATAAGATGAAAAAGGATATTGAGGAGGAATCATCAACGCAGCAGTTACATCCATCACATGGATCTCAAGATCACAGCCATGTCCAGACTCCACCTCATGACTTGAAGAAAGAAAGAATTGATAAGCAGAATAATGACACTGAAAACCAGATTTCAAAGCGACAAACAGAAATGAATGAACAATCATCTGTTGATCTCCAAATTGAAGAGAAGATGGAATCCGCTCCCAATGAAAACAAGACTAGTGGTGGAAAAAGTCACAAGGAGAACAAGCCAATCAAAGGCAAGGGAAATGAAGAACCACCAACTGAATCTGATGTTGGATTGCCTCTATCTATTGATTCAGTTAAAAACAATGCGTCTGTGGACATGTCAAAAGAAAATTATCATGATCAGCCAAATGCTATGGGAGAGGTTAAACATTTGGAAGAAAAACAAGAAGTTCATCATAGCATCCATGATATGACTGCTGATGAACCACACATAGCAAAGCGAAAGGAGGCAATGGATCTTAAAACATCTGAAGGTCAAGAACACACAAGCAATGCAGATCAGACGGGAAATCTTGGGCAACAAAATGTAGATGCTAAGAAACTGCAAGAGCTACACAAAGCAAAAACAACTTTGCTTTCCCAACCCATTAATTCCAGCAGCATACCTTCACACGGCATGAAGGTGGCTCCTAAGATGACTATGAAAGAACTCCGCCGCCACTTGAAAAAGGTAGACAAGAAGGCAAAACTTGATGAAGGCGACCCTGCAAGAGCAATTCAAGCTGGAAATTTAGCCATGGAAACTTATCATCATTCTTCCGGTTCGAAGATTAAAGGCAAAAGAGTAGAAGATATCCATTTGAATCAGGTTTCAACTCATAATACTTCTACTTCTATTGCGCAAATGCATGATAAAATTACCATTCCCTCCCTGGATGATCCTCAAGTGGCTCTAGAGTTGCTAAAACACTTCGATGCATCAGCTAAACGCCTCCAAATAACAGAGTTTGTGGACAATCATGTTGTATATCCATATGATCATTCCATAACAAAAGACCTTGATGTTTCTGCACTTTGTCGTTGGCTTCAAGTTCAAGCGCTTCGTTCAGTGAGTGTTGCAAGATATGCTGAGATGAAGTTCGAAGCTGCCAAACGGGAAAGAGAGGAAGAATTAAGACTTGCAAGAGAAGAAAATGCAAAGGCTGAAGAGGCTCTGAAAAAAATGGAGGAGAAGGTTTCACGTGTTGAATCGTTGGAGAAAAGAGTTGAGGATTTGAATTCTGAGGTGGCTTCTTTGAGAAGTAAATATGAAGAAAGTCAAAAGTCGCTCAAAGAAGCCCAAAAGAAAGTTGAAGACGAGCTTCGGGAATGGAAAGAGAAAGAATGTTGTTGGAAAACAAGAGAGAGTGAGCTGATTACGGAGGCGGCAACTCAGTGGGTGAACTCGTTTGAGCATTGCATGTTGCAGGTTTCCACTTTGCACCCGGACATTGATTTAAGTAGGTTAGGAGCTTTCAAGGAGATTCAGAATGGGCAGATAGTATCCCCCTCTGATTCAGAAGAGACTGGAAGTGAAGAAGACACCAGGAACTTTGAAGATGGTGGTCATGGCGACCAGAAATAA 4827 0.4079 MLSSSTTEYDVFISFRGEDTRKTFTGRLFNALKDRAIRVYMDRLLKGGDEIWPTLEKAIENSLMSIVVFSENFATSKWCLEELVKIVQWRDHHGQVVIPVFYRTEPRDVRSQRGSYEKAFAKYEREEKESNREKISKWRQALKEAANISGWHSTHYEDDDELARKVVKDVLEMRILKHPNIPTGLVGIKQIRKSIKFKMKQHGVIGIWGMPGIGKTTIAKMLFAKSFPHYDYVCYAENAKEYTPQRLLSELLREQISTDEAGFVNTLSRLSNRKVLIVLDNVKEYDQTLLEAVCEGYKSHSRDSKLIITTTDKDLLEKRVEWTFEVKQWTDSKSIELLSLKAFEERIPPKPFENLVNMVVKYAGGIPLALNVLGSYLRHKSIQFWENTLKKLQKHLHQGIDIAFRKIYDELDKPDKEIFLDIAFFFHGEKKDLVSSILEACNFSAINGIEVLHDKAMITTIPFKETIDMHGLLRELAYKVVHEENSKDPRKRSRLRDTQDICDVLKENKKSLDAIEGIILDLSQIKNMHLSPDAFKRMNKLRFLKFYIPSNQISGKMVLPKDLEPFSDKLRYFEWHQYPFVSLPPSFCAKLLVEIRMPHSHVKRLWEEKQELEHLEGIDLSECKELEELPDLSEAKRLKWVNLTGCETLTILPSSVFSSNTLVSLILDRCTNLQCVKAKGHLNSLQYISVKGCSNLTEFAVSSDLIKNLDLSYTKIEELDKSIGKLQKLESLNLEGSRVKHLPKVLSALKLLKELKHSYNGLEIDKQQLQDLFNSLHSLQILHLKDCKNSFEFPDNIIALSKLRELRLDGSYVTRLPATIKGLQELEILSLDNCIYLETLPEPPSSIKEFSVVNCSSLSVAHLNTLATKMVGKTKRISFNNSLTLSSGDILHSIMESIHSTMMSAVSNNATVRSYGTDVHSYNYNSVEVSLPGDTIPEQFAYKTEKSSSITIELPDSLSNSIGFIYSVVLSPRHGTKKHRAKIRCQYSFAGGTNSSWEDITISELNSDHLFIWYDPFHTDKILGQDKPSFHLEFSVVATDTGEVDDSIIVKECGVQIINESEWQIFSQEFDKMKKDIEEESSTQQLHPSHGSQDHSHVQTPPHDLKKERIDKQNNDTENQISKRQTEMNEQSSVDLQIEEKMESAPNENKTSGGKSHKENKPIKGKGNEEPPTESDVGLPLSIDSVKNNASVDMSKENYHDQPNAMGEVKHLEEKQEVHHSIHDMTADEPHIAKRKEAMDLKTSEGQEHTSNADQTGNLGQQNVDAKKLQELHKAKTTLLSQPINSSSIPSHGMKVAPKMTMKELRRHLKKVDKKAKLDEGDPARAIQAGNLAMETYHHSSGSKIKGKRVEDIHLNQVSTHNTSTSIAQMHDKITIPSLDDPQVALELLKHFDASAKRLQITEFVDNHVVYPYDHSITKDLDVSALCRWLQVQALRSVSVARYAEMKFEAAKREREEELRLAREENAKAEEALKKMEEKVSRVESLEKRVEDLNSEVASLRSKYEESQKSLKEAQKKVEDELREWKEKECCWKTRESELITEAATQWVNSFEHCMLQVSTLHPDIDLSRLGAFKEIQNGQIVSPSDSEETGSEEDTRNFEDGGHGDQK 1608
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271895g00028 1608 FunFam Disease resistance protein (TIR-NBS-LRR class) 5 175 - -
Stsc271895g00028 1608 MobiDBLite consensus disorder prediction 1119 1133 - -
Stsc271895g00028 1608 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 175 422 IPR027417 -
Stsc271895g00028 1608 SUPERFAMILY Toll/Interleukin receptor TIR domain 4 151 IPR035897 -
Stsc271895g00028 1608 Coils Coil 1107 1127 - -
Stsc271895g00028 1608 SMART till_3 8 148 IPR000157 GO:0007165
Stsc271895g00028 1608 Gene3D - 176 322 IPR027417 -
Stsc271895g00028 1608 Pfam TIR domain 9 173 IPR000157 GO:0007165
Stsc271895g00028 1608 SUPERFAMILY L domain-like 519 865 - -
Stsc271895g00028 1608 MobiDBLite consensus disorder prediction 1134 1171 - -
Stsc271895g00028 1608 Gene3D - 6 175 IPR035897 -
Stsc271895g00028 1608 Coils Coil 752 772 - -
Stsc271895g00028 1608 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 9 699 IPR044974 GO:0006952
Stsc271895g00028 1608 Coils Coil 1448 1528 - -
Stsc271895g00028 1608 Gene3D - 330 412 IPR042197 -
Stsc271895g00028 1608 MobiDBLite consensus disorder prediction 1097 1118 - -
Stsc271895g00028 1608 Gene3D Ribonuclease Inhibitor 474 703 IPR032675 -
Stsc271895g00028 1608 Gene3D Ribonuclease Inhibitor 704 905 IPR032675 -
Stsc271895g00028 1608 MobiDBLite consensus disorder prediction 1077 1181 - -
Stsc271895g00028 1608 MobiDBLite consensus disorder prediction 1590 1608 - -
Stsc271895g00028 1608 Pfam NB-ARC domain 198 411 IPR002182 GO:0043531
Stsc271895g00028 1608 Pfam C-JID domain 931 1062 IPR045344 -
Stsc271895g00028 1608 PRINTS Disease resistance protein signature 363 377 - -
Stsc271895g00028 1608 PRINTS Disease resistance protein signature 610 626 - -
Stsc271895g00028 1608 PRINTS Disease resistance protein signature 204 219 - -
Stsc271895g00028 1608 PRINTS Disease resistance protein signature 269 283 - -
Stsc271895g00028 1608 MobiDBLite consensus disorder prediction 1578 1608 - -
Stsc271895g00028 1608 ProSiteProfiles TIR domain profile. 7 174 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271895g00028 Stsc-Chr271895 157690 163962 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271895g00028 4 833 WRKY Transcription Factor Family AT4G12020 29.089 7.78e-76 277
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271895g00028 - - aip:110266592 2429.82