Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271895g00027 ATGTTGTCTTCTAGTACGACAGAGTACGATGTATTTATTAGCTTTAGAGGTGAGGATACCCGCAAAACCTTCACTGGCCGTCTGTTTAACGCTCTGAAAGACAGGGCAATCCGTGTATACATGGATCGTCTTCTCAAGGGAGGAGATGAAATCTGGCCAACACTCGAGAAAGCCATTGAGAACTCGCTAATGTCCATCGTGGTTTTCTCAGAAAACTTCGCCACCTCCAAGTGGTGCTTGGAAGAGCTAGTCAAGATTGTCCAATGGAGGGATCATCACGGTCAAGTTGTTATACCGGTGTTCTATAGAACAGAGCCGAGAGATGTACGGAGCCAGAGGGGGAGCTATGAGAAGGCGTTTGCTAAATACGAGAGAGAAGAGAAGGAATCCAACAGAGAGAAGATAAGCAAGTGGAGGCAGGCTCTCAAGGAAGCAGCTAATATATCTGGCTGGCATTCCACACACTATGAGGATGATGATGAACTCGCCAGAAAGGTTGTAAAAGATGTATTGGAAATGCGTATCCTAAAGCATCCCAATATACCAACAGGCTTGGTTGGAATAAAACAAATTCGTAAAAGTATTAAATTCAAGATGAAGCAACACGGAGTAATTGGAATTTGGGGTATGCCAGGAATAGGGAAGACAACCATAGCTAAAATGTTATTTGCAAAATCCTTTCCTCATTATGACTATGTTTGCTATGCGGAAAATGCAAAAGAATACACTCCTCAAAGACTTCTCTCGGAGCTACTAAGGGAACAAATTTCCACTGATGAGGCAGGATTCGTCAACACTTTGAGCCGCCTTAGCAATAGGAAAGTTCTCATTGTTCTCGACAATGTCAAGGAGTATGATCAAACATTGTTAGAAGCAGTGTGCGAAGGATACAAGAGCCACAGTCGAGACAGTAAACTTATTATAACAACCACAGATAAGGATTTGCTTGAAAAGAGAGTTGAGTGGACATTTGAAGTCAAACAATGGACCGATTCAAAATCTATAGAGCTTCTTAGCCTCAAAGCTTTCGAGGAAAGAATCCCTCCAAAGCCTTTCGAGAATCTGGTAAATATGGTTGTTAAGTATGCTGGGGGAATTCCATTAGCTCTCAACGTTTTGGGTTCATATCTTCGACACAAAAGCATTCAGTTCTGGGAAAATACTTTGAAAAAGCTCCAGAAGCATCTTCATCAGGGCATTGATATTGCCTTTAGAAAAATTTATGATGAACTGGACAAGCCAGACAAGGAGATATTTCTTGATATTGCATTCTTTTTCCATGGCGAAAAGAAAGATCTTGTCTCAAGCATATTAGAAGCATGTAATTTCTCAGCAATAAATGGAATAGAGGTCCTTCATGATAAAGCAATGATTACTACTATTCCATTTAAAGAAACAATCGACATGCATGGCTTGCTAAGGGAACTGGCTTACAAGGTCGTACACGAGGAAAACAGTAAAGACCCTAGAAAACGTAGCAGATTGAGGGATACTCAGGACATTTGTGACGTACTCAAAGAGAACAAGAAATCGCTTGATGCAATTGAAGGCATAATATTAGATTTGTCTCAAATTAAGAACATGCATTTGAGTCCCGATGCATTTAAAAGGATGAATAAGTTGAGATTTCTAAAATTCTATATCCCTTCCAATCAGATTTCTGGTAAAATGGTCCTTCCTAAAGACCTTGAGCCATTTTCTGATAAACTAAGGTACTTCGAGTGGCATCAGTACCCTTTCGTTTCTCTTCCACCAAGTTTTTGTGCTAAGTTACTTGTTGAGATTCGCATGCCTCACAGCCATGTCAAGAGACTTTGGGAGGAGAAGCAGGAACTTGAGCATTTAGAAGGGATCGACTTAAGTGAATGCAAAGAGTTAGAAGAGCTTCCAGATTTGTCTGAGGCTAAAAGACTCAAATGGGTGAATCTCACCGGTTGTGAGACTTTGACTATTCTTCCTTCATCTGTTTTTTCCTCAAACACACTTGTTTCTTTGATATTGGATAGGTGCACAAATTTGCAGTGTGTTAAGGCCAAAGGGCATCTGAATTCACTGCAGTACATAAGTGTCAAAGGATGCTCAAATCTCACAGAATTTGCAGTGTCATCAGATTTGATAAAAAACTTGGATTTGAGTTACACAAAGATCGAAGAGCTGGACAAATCAATCGGGAAATTACAGAAGCTTGAATCCCTCAATCTAGAAGGATCAAGAGTTAAGCATCTTCCAAAGGTGCTATCGGCACTGAAATTGCTTAAGGAGTTGAAGCATTCATACAATGGACTAGAAATTGACAAGCAGCAGCTGCAAGACCTGTTTAACAGCTTACACTCTCTTCAGATACTACATTTGAAGGATTGTAAGAACTCATTTGAATTCCCCGACAACATCATAGCCTTATCAAAATTGCGCGAGCTAAGGCTAGATGGAAGCTATGTGACCAGGCTACCTGCAACTATCAAGGGTCTTCAAGAGTTGGAAATTTTGTCCCTAGATAATTGCATTTATCTTGAGACACTGCCGGAGCCTCCATCTTCTATCAAGGAGTTCTCTGTCGTTAACTGTAGCTCATTGTCTGTAGCACATCTAAACACTCTGGCAACAAAGATGGTGGGAAAGACAAAACGCATCTCATTCAATAATAGCTTGACATTGTCGTCTGGAGACATATTGCATTCAATCATGGAAAGCATCCATTCAACAATGATGAGTGCTGTATCTAACAATGCGACGGTAAGAAGCTATGGAACAGATGTCCATAGCTACAATTACAATAGTGTGGAGGTTTCTTTGCCAGGAGACACAATCCCGGAGCAATTTGCATATAAAACGGAGAAATCCTCCTCCATAACAATTGAACTCCCTGACTCTCTTTCCAACTCCATTGGCTTTATCTATTCAGTGGTTCTTTCACCGCGTCATGGAACGAAGAAGCACCGTGCCAAAATCCGATGCCAGTACAGCTTTGCAGGAGGCACAAATTCTTCTTGGGAGGACATAACCATAAGTGAATTGAATTCTGATCATTTATTTATATGGTATGATCCTTTCCACACTGACAAAATTCTTGGACAAGATAAGCCTAGTTTTCATCTTGAGTTCAGTGTTGTTGCAACTGACACCGGGGAAGTTGATGACTCCATCATTGTTAAGGAGTGTGGTGTTCAGATCATAAATGAATCAGAATGGCAGATATTCTCACAAGAATTTGATAAGATGAAAAAGGATATTGAGGAGGAATCATCAACGCAGCAGTTACATCCATCACATGGATCTCAAGATCACAGCCATGTCCAGACTCCACCTCATGACTTGAAGAAAGAAAGAATTGATAAGCAGAATAATGACACTGAAAACCAGATTTCAAAGCGACAAACAGAAATGAATGAACAATCATCTGTTGATCTCCAAATTGAAGAGAAGATGGAATCCGCTCCCAATGAAAACAAGACTAGTGGTGGAAAAAGTCACAAGGAGAACAAGCCAATCAAAGGCAAGGGAAATGAAGAACCACCAACTGAATCTGATGTTGGATTGCCTCTATCTATTGATTCAGTTAAAAACAATGCGTCTGTGGACATGTCAAAAGAAAATTATCATGATCAGCCAAATGCTATGGGAGAGGTTAAACATTTGGAAGAAAAACAAGAAGTTCATCATAGCATCCATGATATGACTGCTGATGAACCACACATAGCAAAGCGAAAGGAGGCAATGGATCTTAAAACATCTGAAGGTCAAGAACACACAAGCAATGCAGATCAGACGGGAAATCTTGGGCAACAAAATGTAGATGCTAAGAAACTGCAAGAGCTACACAAAGCAAAAACAACTTTGCTTTCCCAACCCATTAATTCCAGCAGCATACCTTCACACGGCAGTGGCTCCTAA 3891 0.405 MLSSSTTEYDVFISFRGEDTRKTFTGRLFNALKDRAIRVYMDRLLKGGDEIWPTLEKAIENSLMSIVVFSENFATSKWCLEELVKIVQWRDHHGQVVIPVFYRTEPRDVRSQRGSYEKAFAKYEREEKESNREKISKWRQALKEAANISGWHSTHYEDDDELARKVVKDVLEMRILKHPNIPTGLVGIKQIRKSIKFKMKQHGVIGIWGMPGIGKTTIAKMLFAKSFPHYDYVCYAENAKEYTPQRLLSELLREQISTDEAGFVNTLSRLSNRKVLIVLDNVKEYDQTLLEAVCEGYKSHSRDSKLIITTTDKDLLEKRVEWTFEVKQWTDSKSIELLSLKAFEERIPPKPFENLVNMVVKYAGGIPLALNVLGSYLRHKSIQFWENTLKKLQKHLHQGIDIAFRKIYDELDKPDKEIFLDIAFFFHGEKKDLVSSILEACNFSAINGIEVLHDKAMITTIPFKETIDMHGLLRELAYKVVHEENSKDPRKRSRLRDTQDICDVLKENKKSLDAIEGIILDLSQIKNMHLSPDAFKRMNKLRFLKFYIPSNQISGKMVLPKDLEPFSDKLRYFEWHQYPFVSLPPSFCAKLLVEIRMPHSHVKRLWEEKQELEHLEGIDLSECKELEELPDLSEAKRLKWVNLTGCETLTILPSSVFSSNTLVSLILDRCTNLQCVKAKGHLNSLQYISVKGCSNLTEFAVSSDLIKNLDLSYTKIEELDKSIGKLQKLESLNLEGSRVKHLPKVLSALKLLKELKHSYNGLEIDKQQLQDLFNSLHSLQILHLKDCKNSFEFPDNIIALSKLRELRLDGSYVTRLPATIKGLQELEILSLDNCIYLETLPEPPSSIKEFSVVNCSSLSVAHLNTLATKMVGKTKRISFNNSLTLSSGDILHSIMESIHSTMMSAVSNNATVRSYGTDVHSYNYNSVEVSLPGDTIPEQFAYKTEKSSSITIELPDSLSNSIGFIYSVVLSPRHGTKKHRAKIRCQYSFAGGTNSSWEDITISELNSDHLFIWYDPFHTDKILGQDKPSFHLEFSVVATDTGEVDDSIIVKECGVQIINESEWQIFSQEFDKMKKDIEEESSTQQLHPSHGSQDHSHVQTPPHDLKKERIDKQNNDTENQISKRQTEMNEQSSVDLQIEEKMESAPNENKTSGGKSHKENKPIKGKGNEEPPTESDVGLPLSIDSVKNNASVDMSKENYHDQPNAMGEVKHLEEKQEVHHSIHDMTADEPHIAKRKEAMDLKTSEGQEHTSNADQTGNLGQQNVDAKKLQELHKAKTTLLSQPINSSSIPSHGSGS 1296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271895g00027 1296 Gene3D - 176 323 IPR027417 -
Stsc271895g00027 1296 MobiDBLite consensus disorder prediction 1119 1133 - -
Stsc271895g00027 1296 Coils Coil 1107 1127 - -
Stsc271895g00027 1296 SMART till_3 8 148 IPR000157 GO:0007165
Stsc271895g00027 1296 Gene3D - 6 175 IPR035897 -
Stsc271895g00027 1296 PRINTS Disease resistance protein signature 269 283 - -
Stsc271895g00027 1296 PRINTS Disease resistance protein signature 204 219 - -
Stsc271895g00027 1296 PRINTS Disease resistance protein signature 610 626 - -
Stsc271895g00027 1296 PRINTS Disease resistance protein signature 363 377 - -
Stsc271895g00027 1296 Pfam NB-ARC domain 198 411 IPR002182 GO:0043531
Stsc271895g00027 1296 Gene3D Ribonuclease Inhibitor 474 704 IPR032675 -
Stsc271895g00027 1296 Gene3D Ribonuclease Inhibitor 705 907 IPR032675 -
Stsc271895g00027 1296 MobiDBLite consensus disorder prediction 1134 1171 - -
Stsc271895g00027 1296 MobiDBLite consensus disorder prediction 1245 1265 - -
Stsc271895g00027 1296 MobiDBLite consensus disorder prediction 1275 1296 - -
Stsc271895g00027 1296 SUPERFAMILY Toll/Interleukin receptor TIR domain 4 151 IPR035897 -
Stsc271895g00027 1296 Coils Coil 752 772 - -
Stsc271895g00027 1296 Pfam TIR domain 9 173 IPR000157 GO:0007165
Stsc271895g00027 1296 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 175 422 IPR027417 -
Stsc271895g00027 1296 MobiDBLite consensus disorder prediction 1077 1182 - -
Stsc271895g00027 1296 SUPERFAMILY L domain-like 519 865 - -
Stsc271895g00027 1296 Gene3D - 329 412 IPR042197 -
Stsc271895g00027 1296 MobiDBLite consensus disorder prediction 1097 1118 - -
Stsc271895g00027 1296 MobiDBLite consensus disorder prediction 1241 1296 - -
Stsc271895g00027 1296 FunFam Disease resistance protein (TIR-NBS-LRR class) 5 175 - -
Stsc271895g00027 1296 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 9 699 IPR044974 GO:0006952
Stsc271895g00027 1296 Pfam C-JID domain 931 1062 IPR045344 -
Stsc271895g00027 1296 ProSiteProfiles TIR domain profile. 7 174 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271895g00027 Stsc-Chr271895 157690 163962 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271895g00027 4 833 WRKY Transcription Factor Family AT4G12020 29.089 4.67e-76 276