Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271895g00025 ATGTTGTCGTCTCCTTGTAGCACAGAGTACGATGTATTCATTAGCTTCAGAGGTGAGGACACCCGGAAAAACTTCACTGTCCATCTGTTTAACACTCTGAAAGACAGCACAATCCAGACATACATGGATTGTCTTCTGGAGAGAGGAGAAGAAGTGTGGCCAGCACTGGAGAAAGCGATAGAGCGGTCGCTAATGTCGATCGTGGTTTTCTCAGAAAACTACGCGACGTCCAAGTGGTGCTTGGAAGAGTTGGTGAAGATTACTCAATGGAAGGAAGATCACGGTCAGGTTGTTATACCAGTGTTCTATAGAACAGATCCCACAGATGTAAGGAAACAGACTGGGAGTTATGAGAAGGCGTTTGCTAAACACGAAAGAGACTTCGCAGAGAGCGAATCCAACGTCATAACAAAGTGGAGAGATTCTCTCCGCAAATCAGCTAACATATCTGGATGGCACTCCGAATACTTTCCGGACGATTATGAACTCATCAAAGCGGTTGTGAATGATGTATTGAAAATGCGTATCCTAAAGCAACCTCTTGTACCAACAGATCTTGTTGGAATGGAAGAAATCTATGAAAGTATGAAATTCCACGTGGAGTATCATCAAGTAATCGGAATTTGGGGTATGGTTGGAATAGGAAAGAGAACCATTGCCAAAATGTTATTTGCAAAATACTTTCCTAATTATGACCATGTTTGCTATGTGGAAAATGCAAAAGAATATACGCCTAAAAGGCTTATCTCAGAGCTATTAAGGAAGGAGATTCCCATTGATGTGACAGGATTCAAAACCAGTATGATCAGCCTTTGCAAGACGAGAGTTCTCATTGTTCTCAATGATGTGACAAATTCTGATCAATCATTGATAGAAGCAGTGTGCGAAGTGTACAAGAGCTACTATAGTCGAGCAAGTAAACTTGTTATAACAAGCACATATAAGCATTTGCTTATAGGGAGAGTTGATCACATATATGATGTCCAACCATTGGAAAAATCAAAAGCTGTAGAGCTTCTTAGCCTCAAAGCTTTCGGGAAAAGAGTCCCTGAAGAGTCTTTTGCGAAACTGGTAAAAAAGGTCGTTGAGTATGCCGGGGGAAATCCATTAGCTCTCAACCTTTTGGGTTCTGATCTCCGAACCAAAAAGGAAGATTTCTGGCTAAGTACTTTGGAAAAGAAGCGTTCGAATCAGGTCATTTATAATGCCTTTAGAAATATTTATGATGAGTTGGAGGAGCTAGAAAAGGATATATTTCGTGACATTGCATTCTTTTTCCATGGAGAAAAGAAAGATCTCGTCACAAGCATATTAGAAGCCTGTGATTTCTCACCAATAAGAGGGATAGAGGTTCTTCAAGATAAAGCAGTGATTACTACTATCCCATATAAAGAAACAATCGAAATGCATAGCTTGCTAAGGAAAATTGCTTTCGATATTGTAGGCACGGAAAACAGAAAAGACCCTAGAAAACGTAGCCGATTGAAGGATGTTGAAGACATTCGCGATGTACTCGAAGAGAGCAAGGAGACTCTTGATACTGAAGGCATAATATTAGATTTATCTCTAATTAAAGAAGACTTGCGTTTGAGTCCTGACGCATTCAAAAGGATGAAAAAGTTGAGATTTCTAAAATTCTATATCCCCTCGGGTCAGAGTTCTGGTAAGATGATCCATCCTACAGATCTTGAGCCATTTTCTGGTAAATTAAGGTACTTTGAGTGCCATCAGTACCCTTTCAAGTCTCTTCCACAAAGGTTTTGTGCTAAGTTACTTGTTGAGATTCGCATGCCGCACAGCCAGGTCAAGAAACTTTGGGAGGAAAAGCAGGAGCTCGATAATTTAGAAGGGATCGACTTAAGTGAATGCAAAGAGTTAGAAGAGCTTCCAGATTTGTCGGAGGCTAAAAGACTCAGATGGGTGAATCTCTCTGGTTGTGAGAGTTTGGCTGTTCTCCATTCATCTGTTTTTTCCTCCGACACACTTGTTTCTTTGATACTGGATAGGTGCACAGATTTGCAGTGTGTTAAGGCCGAAAGGCATCTGCATTATCTACAGCACTTAAGTGTCAAAGGCTGCTCAAATCTCAGAGAGTTTGCAGTGTCATCAGAGTTAATCAAAAACTTGGATTTGAGTAACACGAAGGTTGAAAAGCTGGACAAATCAATCGGGAAATTACAAAAGCTTGAATGCCTCAATCTAGAAGGTTCAAGAGTTAAGCATCTTCCAAAGGAGCTATCAGAACTGAAATTGCTTAAGGAGTTGAAGCATTCATACAGTGGACTAGTAATTGACAAGCAGCAGCTGCAAGACCTGTTTAACGGCTTACACTCTCTACAAACACTACATTTGAAGGATTGCAGGAACTCATTTGAATTCCCCGAAAACATCAACGCCTTATCGAAATTGCGTGAGTTAAGGCTAGATGGAAGCAATGTGACCAGGTTGCCTTCAACCATCAAACATCTTCAAGAGTTGGAAATTTTGTACCTAAATAATTGCAGCTCCCTTGAGACACTGCCAGAACTTCCACCCTCTGTCAAAGAGTTCTCTGCCGATAACTGCTTCTCATTGGAGTCTGTATCAGATCTAAGCACTCTGGCAACGAAGATGGTGGGAAAGACAAAACGCATCTCATTCAATAATAGCTTAAAATTGTCTGCCGGACACACACTGCATTCGATCATGGAAAGCATCCATTCAACAATGATGAGTGCTGTATCTAGCAATGTCACGGTAAGAAGCTATGCAACCGATGTTCATAGCTACAATTACAATAGTGTGGAGGTTTGTTTGCCCGGAGGTACAATCCCAGAGCAATTTGCATATAAAACGGATAAATCCTCCTCCATAACAATTGAACTCCCTGACTCTCCTTCCAACTTTCTTGGCTTTATCTACTCAGTGGTTCTATCACCACGTCATGGAATGAAGAAGCACGGTGCCAAATTCCAATGCGAATACAACTTTGCAGGAGGCAAGAATTCTTCGTGGGAGGACATAACCATAAGTGAATTGAACTCAGATCATGTATATATATGGTATGATCCATTCCTCACAGATAAAATTCTTGGACAAGATAAGCCAAGTTTTCATCTTGAGTTCAGTGTGGCAACTGACACTGGGGAAGTCGATGACTCCATCCATATTAAAGAGTGTGGTGTTCAAATCATAAATGAATCAGAATGGCAGAGATTTTCATTGGAGTTAGATAAGAAGAAAAAGGATATGGAGGAGGAATCATCAGAGCAGCAGTTACATCCACCACATGGATCTCAAGATCACAACCATGTCCAGATTCCACCTCAAGACTTGAAGAAAGAAAGATTTGATGAGAAGCAGAGCAATGACATGGAAAACCACACATCAAAGCAACAAAGAGAAATGAGTGAACAATCATCTTCTGATAGTAAAATCGATCATTTCCTTGATGCAGAAGAGAAGATGGAATCACCTCCCAGTGAAAACAAGACTAGTGGTAGAAAGAGTAGTCACGGGGAGAACAAGATCAAAGGGAAAGGAAATGAAGAAACACCAACTGAGTCTGAAACTGGATTGCCTCTATCTATTGATTCAGTTAAAAGCAATGGGATGGAAGAGGTCAAACATTTGGAAGAAAAGCAAAAGGAGAAGGAGCGAATGGATCTTGAAACATCTGAATGTGAAGACCGGAGTAGCAATGCAGAACAAACGGAAAATATTGGGCAACAAGACCTAGATGCTAAGAAAAGGCAATTTCCAATCCATTCCAGTATTCCTTCACATGGTGTAAAGGTGGCTCGTAAGTTGACTATAAAAGAACTCGGCCGCTACAAGAAAGCAAAAGTTGAAGGCAACCCTGCAAGAGCAACTCAAGCAAAAGTACAAGATATCCATTTGAGCCACCTTCAAGCTCAAAATACTTGTACTTCCATTGCACAAGTTCATGGTAACATTACCATTCCGTCCTTGGACGATCCTCAAGTTGCTCTTGAGTTGCTAAAACACTTCGATGCATCAACTAAACGCCTCCAAATAACAGAGTTTGTGGACAATCATGTTGTATATCCATATGATCATTCCATAACAAAAGACCTTGATGTTTCTGCACTTTGTCGTTGGCTTCAAGTTCAAGGGCTACGTTCAGTGAGCGTTGCGAGATTCGCCGAGATGAAGTTCTTAGCGGCCAAACGGGAAAGAGAGGAAGAATTAAGGCTTGCAAAAGAAGAAAATGCAAAGGTTAAAGAAGCTTTGAAAACAATGAAGGAAAGGGTTTCGCGTGTTGAATGGTTGGAGAAAAGAGTTGGGGATTTGAAATGCGAGGTAGCTTGTTGGAGAAGTAAATATGAAGAAAGTGAAAAGAAAGTTGAAGACGAGAGTAAACTTGATATGGAGATGGCAGCTGAGTTGGTTATTAGCTCATTTGAAAATTGCAGGTCGCAGGTTTCCACTTTGTACCCAGAGATTGATTTAAGTAGGGTAGGAGCTTTCAAGGAGATTCGGAATGGACAGATAGTATCCCCCTCTGATTCGGAGGACACTGAATGTGAACAAGTATTCAGTAACTTCAAAGATGCTGGACGTGGGGCTGTGTCCAGTAAATTACTAATTTGGTTCCGAAGATTTAAATTTTGTCAATGTTTTGCTTGGATTTTCCCCGAATCAAAAAAGTAA 4653 0.4077 MLSSPCSTEYDVFISFRGEDTRKNFTVHLFNTLKDSTIQTYMDCLLERGEEVWPALEKAIERSLMSIVVFSENYATSKWCLEELVKITQWKEDHGQVVIPVFYRTDPTDVRKQTGSYEKAFAKHERDFAESESNVITKWRDSLRKSANISGWHSEYFPDDYELIKAVVNDVLKMRILKQPLVPTDLVGMEEIYESMKFHVEYHQVIGIWGMVGIGKRTIAKMLFAKYFPNYDHVCYVENAKEYTPKRLISELLRKEIPIDVTGFKTSMISLCKTRVLIVLNDVTNSDQSLIEAVCEVYKSYYSRASKLVITSTYKHLLIGRVDHIYDVQPLEKSKAVELLSLKAFGKRVPEESFAKLVKKVVEYAGGNPLALNLLGSDLRTKKEDFWLSTLEKKRSNQVIYNAFRNIYDELEELEKDIFRDIAFFFHGEKKDLVTSILEACDFSPIRGIEVLQDKAVITTIPYKETIEMHSLLRKIAFDIVGTENRKDPRKRSRLKDVEDIRDVLEESKETLDTEGIILDLSLIKEDLRLSPDAFKRMKKLRFLKFYIPSGQSSGKMIHPTDLEPFSGKLRYFECHQYPFKSLPQRFCAKLLVEIRMPHSQVKKLWEEKQELDNLEGIDLSECKELEELPDLSEAKRLRWVNLSGCESLAVLHSSVFSSDTLVSLILDRCTDLQCVKAERHLHYLQHLSVKGCSNLREFAVSSELIKNLDLSNTKVEKLDKSIGKLQKLECLNLEGSRVKHLPKELSELKLLKELKHSYSGLVIDKQQLQDLFNGLHSLQTLHLKDCRNSFEFPENINALSKLRELRLDGSNVTRLPSTIKHLQELEILYLNNCSSLETLPELPPSVKEFSADNCFSLESVSDLSTLATKMVGKTKRISFNNSLKLSAGHTLHSIMESIHSTMMSAVSSNVTVRSYATDVHSYNYNSVEVCLPGGTIPEQFAYKTDKSSSITIELPDSPSNFLGFIYSVVLSPRHGMKKHGAKFQCEYNFAGGKNSSWEDITISELNSDHVYIWYDPFLTDKILGQDKPSFHLEFSVATDTGEVDDSIHIKECGVQIINESEWQRFSLELDKKKKDMEEESSEQQLHPPHGSQDHNHVQIPPQDLKKERFDEKQSNDMENHTSKQQREMSEQSSSDSKIDHFLDAEEKMESPPSENKTSGRKSSHGENKIKGKGNEETPTESETGLPLSIDSVKSNGMEEVKHLEEKQKEKERMDLETSECEDRSSNAEQTENIGQQDLDAKKRQFPIHSSIPSHGVKVARKLTIKELGRYKKAKVEGNPARATQAKVQDIHLSHLQAQNTCTSIAQVHGNITIPSLDDPQVALELLKHFDASTKRLQITEFVDNHVVYPYDHSITKDLDVSALCRWLQVQGLRSVSVARFAEMKFLAAKREREEELRLAKEENAKVKEALKTMKERVSRVEWLEKRVGDLKCEVACWRSKYEESEKKVEDESKLDMEMAAELVISSFENCRSQVSTLYPEIDLSRVGAFKEIRNGQIVSPSDSEDTECEQVFSNFKDAGRGAVSSKLLIWFRRFKFCQCFAWIFPESKK 1550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271895g00025 1550 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 10 699 IPR044974 GO:0006952
Stsc271895g00025 1550 Coils Coil 495 515 - -
Stsc271895g00025 1550 Pfam Leucine Rich Repeat 592 610 IPR011713 -
Stsc271895g00025 1550 MobiDBLite consensus disorder prediction 1074 1240 - -
Stsc271895g00025 1550 Gene3D - 331 412 IPR042197 -
Stsc271895g00025 1550 Gene3D Ribonuclease Inhibitor 705 915 IPR032675 -
Stsc271895g00025 1550 Gene3D Ribonuclease Inhibitor 481 704 IPR032675 -
Stsc271895g00025 1550 ProSiteProfiles TIR domain profile. 8 175 IPR000157 GO:0007165
Stsc271895g00025 1550 MobiDBLite consensus disorder prediction 1100 1178 - -
Stsc271895g00025 1550 MobiDBLite consensus disorder prediction 1196 1227 - -
Stsc271895g00025 1550 Gene3D - 176 322 IPR027417 -
Stsc271895g00025 1550 Gene3D - 6 175 IPR035897 -
Stsc271895g00025 1550 Pfam TIR domain 10 173 IPR000157 GO:0007165
Stsc271895g00025 1550 Pfam NB-ARC domain 203 383 IPR002182 GO:0043531
Stsc271895g00025 1550 FunFam Disease resistance protein (TIR-NBS-LRR class) 6 176 - -
Stsc271895g00025 1550 SUPERFAMILY L domain-like 530 862 - -
Stsc271895g00025 1550 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 176 422 IPR027417 -
Stsc271895g00025 1550 Coils Coil 1204 1224 - -
Stsc271895g00025 1550 Pfam C-JID domain 932 1062 IPR045344 -
Stsc271895g00025 1550 Coils Coil 1390 1417 - -
Stsc271895g00025 1550 SMART till_3 9 149 IPR000157 GO:0007165
Stsc271895g00025 1550 PRINTS Disease resistance protein signature 205 220 - -
Stsc271895g00025 1550 PRINTS Disease resistance protein signature 365 379 - -
Stsc271895g00025 1550 PRINTS Disease resistance protein signature 610 626 - -
Stsc271895g00025 1550 PRINTS Disease resistance protein signature 270 284 - -
Stsc271895g00025 1550 SUPERFAMILY Toll/Interleukin receptor TIR domain 4 152 IPR035897 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271895g00025 Stsc-Chr271895 139546 147009 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271895g00025 7 833 WRKY Transcription Factor Family AT4G12020 29.474 5.12e-78 284
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271895g00025 - - aip:110266592 2184.07