Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271895g00024 ATGGAGAACTATAAGGCCAAATTCATGTGCAGCTACGGCGGCAACATCCAACGCGACACACACGACCACACTAATCTCTCTTACATCGGCGGCCACACCAAGATCCTCTACGTCCACCGCACCACCATAACATTCTCCGCCATGCTCGCCAAGCTCGCCACACTCTGCAATGTCGCCGCCGACGTCTCCTTCAAGTACCAGCTTCCCGGCGAGGATCTCCACTCCCTTATCTCCGTCACCGACGATGACGACCTCGAAAACATGATGATCGAGTACGATCAACTCCACGCCGCTTCCCCTAAAACTGCTCGCATGCGACTCTTCCTCTTCCCCAACCTACCTCTTGATTCCGCTCCGGCTTCTTCTGAGCCCGAACCCGACCCGGTCGTAAGGCAGTTGCTGCTTCCTCCTCCTCCTTCTTCATCTTCCGGTTTGGTTGGTCCGTTGAGTACTCATGGAAAGTACGACGTGTTTATCAGCTTTAGGGGTGAGGACACGCGCACAAACTTCACCTGCCATCTTCACGAAGCTCTGTGCAGAAAGCGAATAAAGACCTTCATCGATTACGAGCTTCACAAAGGCGACGAGATCTCGCCGTCGCTCTTTCGTGCAATCGAGGATTCGTACGTGTCTGTCATCGTCTTCTCGGAGAACTATGCTAACTCCAAGTGGTGCCTTGAAGAACTTGCGAGGATAGTGGAGTGTAGAAAAGAATATGGACAGGTTGTTATACCTGTGTTCTATGAAATTGAACCAACACATGTAAGGAGGCAGAATGGAAGTTACAAAGAAGCGTTTGAGAGGCACATGTCAAATCCCATGCTTGATATGAACAAGATTCAGAAATGGAAGGATGCTCTGACTGTAGCAGCTGATTTGTCTGGCTGGGATTCTGACTCTCGCTCCTATAGGGATGACACTGAACTCATTCAAAGGATTGTCAAAGACGTTCTGCAAAAGCTAATTTACCATTACCCACCAAATGATTTTAAAGGCCTTGTTGGTATTCAGGAAAAGTCTGCTCCTTTAGAATCATTGCTCAGAGAAGCTCGATCAGTTGGTATCTGGGGGATAGGTGGTATAGGCAAAACAACTATTGCAAGATTTATATTTGGCAAATACTCTCATGAGTTCGAAGGTTCGTGCTTCTTGGAAAATATACGGGAAAGATCAGGAGATCATGTGCAAGGACTACATGATTTACGTGATCAACTTTACTCGGTGCTATTAAATGAAAAAATCCGCCAAAGTAGCACAGCAAATTCAACTTTTATTGAGTGCAGGATCCGCAGACAAAGCAATTTCATAGTTCTTGATGATGTGAGTAGTTCAAAGCAGTTGAAATACCTGGTTGGGGAGCTTGAATCCTGTGGTCCAGGTAGTAAGATCATCATTACAACTAGAGATAAAAGTGTGCTGGAAAACAGGAGAGTTGAGAAAATACATGAGGTGCAGGGGTTAGATTCTCATGAATCCCTTACATTGTTCAGTTTGAATGCATTTAATGAAGACTCTCCTGAAGTGGGATATAAAGAGCTGTCAAGAAGGGCAGTTACCTATTGCAAAGGTGTACCGCTAGCCTTAGTTGTCTTGGGTTCTTTTCTTCATTCTAAAAGTGAAGCTGAATGGGAAAGTGCACTGAACAAAATAGAGAAGATTCCCAATAAGGAAATTCAAACTGTCCTAAGGTTGAGTTATGATGATTTAGATTATGAGGAGCAACAAATATTTCTAGACATTGCGTGTTTTCTTAAAGGAGAGCTAAAAGAAAACATAGTTAGTCTATTAGACAGTTGCAGCCTCTATCCAGTTATTGGCATGAGATCCCTTCTTGATAAGGCTCTCATAACTGTATCTAATGATTCTGTAGGGATGCATGACTTGATACAACAAATGGGTTGGGAGATCGTTCGTCAAGAATCTATCGAAAATCCTGAAAATCGTAGTCGCCTGTGGGATCTTGATGAAACTTGTGATGTTCTGAAAAACAACAAGGGAACTGATGCAATTCAAGGCATGAAGCTAGATACATATCAAATTCAACAAAACCTATGCTTGAGTGTTGACACTTTCAAAAAGATGCCTAATCTAAGATATCTCAAGTTCTTTATCTCCATAAGGGAGCATGGCAAATTAAATGGTCTGCAGCTTCCTGAGGACTTGGAGTTTTCTGAGAAATTAAGGCACCTTGAGTGGCATGCATACCCTTTGTCATCTTTACCATCAAATTTTTGTCCTGAAAAGCTTGTCACTCTTCAAATGCCTAATGGTCAATTTAAAAGACTCTGGAACAAAGTGCAGGATCTTGTTAATCTGAAGGACGTAAACCTAGCTGGATGCCAAGAATTGGTGGAGCTCCCTGATTTGTCTAAGGCACAAAATCTTAAAAATGTGGATCTCTTTGGCTGTAGAAGTTTAAGCAACATCCATCCATCCATTTTATCTTGCAGCACACTTGAGCGTTTGGATCTAACAGGATGCTCAAAGCTTGAGACACTTGAAACCGATACTCATTTTAAATCACTTTGGCACCTCAATATCAGTGGCTGCTCAAGTCTAGTGAAATTTTCTGTGTCTTCAGAAGAAGTTGAAGTCTTGGATTTAATGATGGGAGTCAAAGTATTAAACCCGTCGATTGGCCGTTTCAGCCAAGTAAGAATCTTACATGTCGATGGGCATCGACTTGAGAATCTTCCAAAGGAATTGTCTTGTTTGAAATCTCTTGAGACGCTTTCAATACATAGATGCAGCCGAGTAAGCACCAAAGAAAACCTGCATCTTGTATTTAATGGCTTGCAATCTTTGCGAGAACTGTATTTCATGGACTGTCATTACTTGTTTGAGCTCCCTGACAATATCAACCAGCTATTGTCGCTGCAAAAACTAGTGTTGGATGGAAGCTATGTGGAGAGGTTGCCGGAGACCATCAAGCATCTTTCGGCGCTGGAGACATTGTCATTAAAGGGTTGCAGGAGGCTTCAATCTTTGCCAGAGCTTCCGCCATCCATTATTCATTTGGAAGCCCATAATTGCACATTGTTGCCTATAGCATCATCAAGTTTTACAAATTTTAGTCCACAAGAAGATGGCAGAAGTGATGATTCATTTGATAATCGGGTGAATTTACATGTACAGAAACATGCTGATTCATTCCATCAATATTTAAGGGAATTAGCCCACGGATATGAATTAAGAAGGATTAAAAGAAGAACAGGAGGAGGACGAAGAGCAATGTTTCCAGATAACAATTTCAGAATCTTCTACCAAGATCAGAGAATACCAAAGTGGTTTACATATCAAGCAAAGGGAGCCTCCATAACTTTTGAACTTAATCAGCCTTATGATCTCTGTTCCAGTTTTGTTCTCTGCGTTGTTCTCGCACCCGGTTGGCCCTCCCCAGTCAAGTATGGGCTTATTCTTCAGTATCAATGCCACTTGGAAGATGGTGACATGAACAAACATTCAACTAGTAAAATTTTTCTTGATGATGTTCCTGCAGAACGGGATTTTGATCATATTTATATGTCATTTGACCGTGGTGGCATCATGGATGCAGTTAAGGCATACAAATTAAAATACGAGGGTCAGAGCAAGTCTTACTATTGTAACCTAAAGGTCACCATTGAATTCCATTTCAACTGTTGCACAATTGAGTGGAATCAGGATCATGACTGGTTGATCATAGAGTGTGGGGTATATCCACTTGTTGCCCCTGATTCTCAGTTGAAACAGATGGAATTGGAGTTGGGCATAAAAAACAAAAGACCTAGAGGTATTCTTGAGATTGAGAATATTGAAGGTGGAGTTGGAGTTGGAAGCTCCAGTAACCAAGGACCACTCCCTTCCACAAAGAAACTCAAAGAACTTTGCTAG 3873 0.4234 MENYKAKFMCSYGGNIQRDTHDHTNLSYIGGHTKILYVHRTTITFSAMLAKLATLCNVAADVSFKYQLPGEDLHSLISVTDDDDLENMMIEYDQLHAASPKTARMRLFLFPNLPLDSAPASSEPEPDPVVRQLLLPPPPSSSSGLVGPLSTHGKYDVFISFRGEDTRTNFTCHLHEALCRKRIKTFIDYELHKGDEISPSLFRAIEDSYVSVIVFSENYANSKWCLEELARIVECRKEYGQVVIPVFYEIEPTHVRRQNGSYKEAFERHMSNPMLDMNKIQKWKDALTVAADLSGWDSDSRSYRDDTELIQRIVKDVLQKLIYHYPPNDFKGLVGIQEKSAPLESLLREARSVGIWGIGGIGKTTIARFIFGKYSHEFEGSCFLENIRERSGDHVQGLHDLRDQLYSVLLNEKIRQSSTANSTFIECRIRRQSNFIVLDDVSSSKQLKYLVGELESCGPGSKIIITTRDKSVLENRRVEKIHEVQGLDSHESLTLFSLNAFNEDSPEVGYKELSRRAVTYCKGVPLALVVLGSFLHSKSEAEWESALNKIEKIPNKEIQTVLRLSYDDLDYEEQQIFLDIACFLKGELKENIVSLLDSCSLYPVIGMRSLLDKALITVSNDSVGMHDLIQQMGWEIVRQESIENPENRSRLWDLDETCDVLKNNKGTDAIQGMKLDTYQIQQNLCLSVDTFKKMPNLRYLKFFISIREHGKLNGLQLPEDLEFSEKLRHLEWHAYPLSSLPSNFCPEKLVTLQMPNGQFKRLWNKVQDLVNLKDVNLAGCQELVELPDLSKAQNLKNVDLFGCRSLSNIHPSILSCSTLERLDLTGCSKLETLETDTHFKSLWHLNISGCSSLVKFSVSSEEVEVLDLMMGVKVLNPSIGRFSQVRILHVDGHRLENLPKELSCLKSLETLSIHRCSRVSTKENLHLVFNGLQSLRELYFMDCHYLFELPDNINQLLSLQKLVLDGSYVERLPETIKHLSALETLSLKGCRRLQSLPELPPSIIHLEAHNCTLLPIASSSFTNFSPQEDGRSDDSFDNRVNLHVQKHADSFHQYLRELAHGYELRRIKRRTGGGRRAMFPDNNFRIFYQDQRIPKWFTYQAKGASITFELNQPYDLCSSFVLCVVLAPGWPSPVKYGLILQYQCHLEDGDMNKHSTSKIFLDDVPAERDFDHIYMSFDRGGIMDAVKAYKLKYEGQSKSYYCNLKVTIEFHFNCCTIEWNQDHDWLIIECGVYPLVAPDSQLKQMELELGIKNKRPRGILEIENIEGGVGVGSSSNQGPLPSTKKLKELC 1290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271895g00024 1290 CDD PB1_UP2 9 110 - -
Stsc271895g00024 1290 Pfam TIR domain 154 335 IPR000157 GO:0007165
Stsc271895g00024 1290 ProSiteProfiles TIR domain profile. 153 321 IPR000157 GO:0007165
Stsc271895g00024 1290 Gene3D - 152 321 IPR035897 -
Stsc271895g00024 1290 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 155 858 IPR044974 GO:0006952
Stsc271895g00024 1290 SMART till_3 154 293 IPR000157 GO:0007165
Stsc271895g00024 1290 Gene3D Ribonuclease Inhibitor 671 865 IPR032675 -
Stsc271895g00024 1290 PRINTS Disease resistance protein signature 521 535 - -
Stsc271895g00024 1290 PRINTS Disease resistance protein signature 977 993 - -
Stsc271895g00024 1290 PRINTS Disease resistance protein signature 352 367 - -
Stsc271895g00024 1290 PRINTS Disease resistance protein signature 428 442 - -
Stsc271895g00024 1290 Gene3D - 27 111 - -
Stsc271895g00024 1290 Pfam PB1 domain 26 111 IPR000270 GO:0005515
Stsc271895g00024 1290 Gene3D - 322 482 IPR027417 -
Stsc271895g00024 1290 MobiDBLite consensus disorder prediction 1271 1290 - -
Stsc271895g00024 1290 Pfam C-JID domain 1091 1217 IPR045344 -
Stsc271895g00024 1290 Pfam NB-ARC domain 352 565 IPR002182 GO:0043531
Stsc271895g00024 1290 FunFam Disease resistance protein (TIR-NBS-LRR class) 151 323 - -
Stsc271895g00024 1290 Gene3D - 486 570 IPR042197 -
Stsc271895g00024 1290 SUPERFAMILY Toll/Interleukin receptor TIR domain 151 296 IPR035897 -
Stsc271895g00024 1290 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 316 580 IPR027417 -
Stsc271895g00024 1290 SUPERFAMILY CAD & PB1 domains 25 114 - -
Stsc271895g00024 1290 SUPERFAMILY L domain-like 625 1014 - -
Stsc271895g00024 1290 Gene3D Ribonuclease Inhibitor 866 1028 IPR032675 -
Stsc271895g00024 1290 SMART PB1_new 21 112 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271895g00024 Stsc-Chr271895 133478 138017 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271895g00024 149 1021 WRKY Transcription Factor Family AT4G12020 31.762 3.82e-101 353
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271895g00024 - - ahf:112710162 2261.49