Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271895g00017 ATGGGTGGTTCAGGAAAGTGGTTTAAATCACTCATATCTCACAGAAAGCCCTCCACCAGCGATCAAGAGAGGGGTGGTGGTGGTGCTGATAAGAGTAAGAAGAAGTGGAAGTTATGGAGAAGCGCTTCAGAAGGGTTTGGTTTTGGATCCTCGACGAAGAAGGGTGGCGGTTCACACAAGGCTTTTTCTTCTCTGGTGGATGATGAAGTTGCTTTTAATGCTGCTGTGGCCACAGTGGTGAGAGCACCCCACAAAGATTTCATGGTCATCAAGCAGGAATGGGCTGCTATACGGATTCAAGCCATTTTTCGAGGCTTCTTGGCAAGACGAGCTTTGAGGGCGTTGCGGGCAGTTGTGAGGTTGCAAGCTATATTTCGTGGAAGGCTGGTGAGGAAGCAAGCTGCTGTTACTCTAAGGTGCATGCAGGCTCTTGTTCGAGTTCAAGCGCGCGTCCGCGCAAGGAATGTGAGGAACTCTCCAGAAGGGAAAGCCGTGCAGACACTATTGGATCAGTACCGAAACCAAGCTGATCCTATTAAGGAGGCTGAGGATGGATGGTGTGACCTTCCAGGAACTGCAGAGGAAGTTAAAGCAAAACTTCAGATGAGGCAAGAAGGAGCAATTAAGAGAGAAAGAGCAATGGCATACTCAATGTTTAACAAGTCAACAGTATGTGCTAGTCCACGGTCAAGAGCTTCCAGGCCAACCACACCTCTCAGGCAAGGCAGCCTAGACAATAAGAGCTCCAGATCGAGCATGTTAGAGCGCTGGATGGCGACGAAGCCATGGGAGAGCAGGCTAATTGAAGAGACCAATTTCGACTCGCTTGACATGACACCTGTGTCTGGAAAATGTGATGATGTTGTTCCTCCCTTCAATTCACATCAACAAAGAGGCTTATCCAAAGCAAGAAGCAGTGGCATGACAAGAAGAGTTTCTTCCAAGTCTCTCACAACCACTCAATCAACTCCATCTTCTTCAGCTGTCAGCTCCGAATGCATGTATGATGATAGCCCTGCCTCAACCTCATGTACCTCTGGATCACTGCCATCAATCAACAATGTTGTGGAGGAAGCAGCAGAAGATAGAAGTGTTAATAAACCAACCTACATGAATCTGACAGAATCAACCAAAGCCAAACTGAAAACTTGCAGGTTTTCTTCGCAGAGTTCAAAGCGACTCTTAATGGATGATTGCCATTCTCTTGGCTCAAGAACAGAGTTTCTAAATGGAGACAATAGAAGCAGTTGTGGATCCTATCCTTCCGTTAATTCGTGGAAGGACCTCTACGCAACACCTTCAAGAGCAAGTTATCAGAAACGATTAAATTCAGACGATAAGTAA 1344 0.4673 MGGSGKWFKSLISHRKPSTSDQERGGGGADKSKKKWKLWRSASEGFGFGSSTKKGGGSHKAFSSLVDDEVAFNAAVATVVRAPHKDFMVIKQEWAAIRIQAIFRGFLARRALRALRAVVRLQAIFRGRLVRKQAAVTLRCMQALVRVQARVRARNVRNSPEGKAVQTLLDQYRNQADPIKEAEDGWCDLPGTAEEVKAKLQMRQEGAIKRERAMAYSMFNKSTVCASPRSRASRPTTPLRQGSLDNKSSRSSMLERWMATKPWESRLIEETNFDSLDMTPVSGKCDDVVPPFNSHQQRGLSKARSSGMTRRVSSKSLTTTQSTPSSSAVSSECMYDDSPASTSCTSGSLPSINNVVEEAAEDRSVNKPTYMNLTESTKAKLKTCRFSSQSSKRLLMDDCHSLGSRTEFLNGDNRSSCGSYPSVNSWKDLYATPSRASYQKRLNSDDK 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271895g00017 447 MobiDBLite consensus disorder prediction 1 37 - -
Stsc271895g00017 447 MobiDBLite consensus disorder prediction 225 252 - -
Stsc271895g00017 447 SMART iq_5 91 113 IPR000048 GO:0005515
Stsc271895g00017 447 SMART iq_5 114 135 IPR000048 GO:0005515
Stsc271895g00017 447 MobiDBLite consensus disorder prediction 294 334 - -
Stsc271895g00017 447 MobiDBLite consensus disorder prediction 287 334 - -
Stsc271895g00017 447 PANTHER IQ-DOMAIN 5-RELATED 1 421 - -
Stsc271895g00017 447 Pfam IQ calmodulin-binding motif 116 133 IPR000048 GO:0005515
Stsc271895g00017 447 Pfam IQ calmodulin-binding motif 94 113 IPR000048 GO:0005515
Stsc271895g00017 447 MobiDBLite consensus disorder prediction 16 37 - -
Stsc271895g00017 447 Gene3D - 92 134 - -
Stsc271895g00017 447 ProSiteProfiles IQ motif profile. 92 120 IPR000048 GO:0005515
Stsc271895g00017 447 ProSiteProfiles IQ motif profile. 116 143 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271895g00017 Stsc-Chr271895 97838 100642 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271895g00017 1 430 IQD Protein Family AT1G72670 44.820 1.17e-92 285
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271895g00017 - - ahf:112710157 752.666