Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271895g00003 ATGATGAACAAGAGTTTGATATTCCAACAACAAAATCAGCAGGTAGTTGTGGAAGAAAACATGTCTAATTTGACTTCAGCTTCAAACGAAGGTAACAGTGTTTCTTCAGGTACCTTCATCACTCCACCAACAACAACAACATCTGACACTTCAATTCAGCCGCCATCAAAGAAAAAGAGAAACCTTCCCGGGAACCCAGACCCAGATGCTGAGGTAATAGCGTTATCTCCAAAATCGCTCTTAGCAACGAACAGATTCATGTGTGAGATCTGCAACAAAGGGTTTCAGAGAGACCAAAACCTACAACTCCATAGAAGAGGACACAACCTACCATGGAAGCTGAAGCAAAGATCAAGCAAAGAGATAAGAAAGAAAGTGTACGTGTGTCCTGAGCCCAGTTGCGTCCACCATGATCCGTCACGGGCCTTGGGGGACTTAACTGGGATCAAGAAACACTTCTGTAGGAAGCATGGAGAGAAGAAGTGGAAGTGTGAGAAGTGTTCAAAGAAGTATGCTGTTCAGTCTGATTGGAAAGCACATTCCAAGACCTGTGGGACTAGAGAGTACAGATGTGACTGTGGAACTCTTTTCTCAAGGAGAGACAGTTTCATAACCCACAGAGCTTTCTGTGATGCACTTGCACAAGAGACAGCAAGAAGCACCACCAACACTTCAACAACAATAATACCCCAACTTCAATTCAATAATCCCCAAATCTTCCCATTGAAGAAAGAGCCATTACAGTTACAAAGTTTCAACCTTGTTAGGACAGAATTACCCCCATGGCTCGGTACTAGTAATACTTCAAACCCATCTCAAAATAATCATCAAGGTCAAGACTTTTTGAATCTCCATGAAAATGAGAACCCAAATCCAAATCAAAACCCTAACCCTAGGCTAGTAGGGGTAGGGGTAGGGCTAGGGGTTGGTGGTCCCACAATTGAAGGGTACCAGCCTTGTGCAGCTTCATCACCTCACATGTCAGCAACAGCTTTGCTGCAAAAAGCAGCTCAGATGGGTGCAACCATGAGCAACACCACCAACAGCATTGGCCATGGGCATGGGCCCCACCATCAAAGTCACGTGTCTCTTAATCCTTCTCAAACCCTTAATCACTTTCCTTTCAATTTGTCCTCACGTGATCACCACCATAACCATATCACCACCACTACCACTACCACCACCACCAATACAACAACAACTGCTGCTCCTTCTTCTTCTTCTTCTTATGATGTTATGATGATGAACTCTTTCTCCTCTGGATTTGAAGCGTCACAGTTTGATGACCCTTTTGGTGGAATTCTTGTTAGTAATCATAATAATAATAATATCACAAAGAAAGATGATGATGATGATGGTGGTGATCATGATAATGATGATGATAATCATGACACTAATAGCTTCTTGTTGCATGATACCCTTCCAAAGGCAACAACCACCACCGCCGCCGCCAACGGTGGTCGTGGCGGTGGCGGTGGAAAAGAAGAGTTGACGAGGGATTTCTTGGGTCTAAGGCCACTTTCCCATAGTGACATTCTCAGCATTGCAGCTATGGGGAACTGTATGAATAATGATCAACAAAACCAAGCTCAAAAGCACTGGTAA 1605 0.4386 MMNKSLIFQQQNQQVVVEENMSNLTSASNEGNSVSSGTFITPPTTTTSDTSIQPPSKKKRNLPGNPDPDAEVIALSPKSLLATNRFMCEICNKGFQRDQNLQLHRRGHNLPWKLKQRSSKEIRKKVYVCPEPSCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAQETARSTTNTSTTIIPQLQFNNPQIFPLKKEPLQLQSFNLVRTELPPWLGTSNTSNPSQNNHQGQDFLNLHENENPNPNQNPNPRLVGVGVGLGVGGPTIEGYQPCAASSPHMSATALLQKAAQMGATMSNTTNSIGHGHGPHHQSHVSLNPSQTLNHFPFNLSSRDHHHNHITTTTTTTTTNTTTTAAPSSSSSYDVMMMNSFSSGFEASQFDDPFGGILVSNHNNNNITKKDDDDDGGDHDNDDDNHDTNSFLLHDTLPKATTTTAAANGGRGGGGGKEELTRDFLGLRPLSHSDILSIAAMGNCMNNDQQNQAQKHW 534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271895g00003 534 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 35 524 IPR031140 -
Stsc271895g00003 534 SMART c2h2final6 127 157 IPR013087 -
Stsc271895g00003 534 SMART c2h2final6 86 108 IPR013087 -
Stsc271895g00003 534 SMART c2h2final6 162 182 IPR013087 -
Stsc271895g00003 534 MobiDBLite consensus disorder prediction 263 297 - -
Stsc271895g00003 534 SUPERFAMILY beta-beta-alpha zinc fingers 85 182 IPR036236 -
Stsc271895g00003 534 ProSiteProfiles Zinc finger C2H2 type domain profile. 86 108 IPR013087 -
Stsc271895g00003 534 Gene3D Classic Zinc Finger 140 220 - -
Stsc271895g00003 534 ProSitePatterns Zinc finger C2H2 type domain signature. 88 108 IPR013087 -
Stsc271895g00003 534 Gene3D Classic Zinc Finger 67 132 - -
Stsc271895g00003 534 MobiDBLite consensus disorder prediction 25 70 - -
Stsc271895g00003 534 MobiDBLite consensus disorder prediction 388 409 - -
Stsc271895g00003 534 MobiDBLite consensus disorder prediction 25 58 - -
Stsc271895g00003 534 FunFam protein indeterminate-domain 5, chloroplastic-like 140 219 - -
Stsc271895g00003 534 FunFam protein indeterminate-domain 12-like 65 133 - -
Stsc271895g00003 534 MobiDBLite consensus disorder prediction 440 475 - -
Stsc271895g00003 534 Pfam Zinc-finger double-stranded RNA-binding 86 108 IPR022755 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271895g00003 Stsc-Chr271895 17976 21055 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271895g00003 44 353 IDZ Gene Family AT5G66730 50.660 5.18e-117 353
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Stsc271895g00003 zf-C2H2_jaz 6.7e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271895g00003 K25870 - gmx:100808344 521.546