Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271895g00001 ATGAGCTCTTCAACCAGCACCATTACAACAAGGTCTGGTAACACCACCACCCAGGCTTGTGCTGCCTGCAAATACCAACGCCGCAAATGCGCTCCTGATTGCATTCTTGCTCCCTATTTCCCCCATGACCGCCAGCGCCAATTCCTCAACGCTCACAAGCTTTTTGGTGTTAGCAACATCACCAAGATAATCAAGTTTCTTGATCCTCACGATAAGGATCAAGCCATGAAAACCATCATCTTCCAATCTGATATGCGAGCCAATGATCCTGTTGGTGGTTGCTATAGGTACATACAAGAGCTTCAGGCTCAGATCGAGTTTTACCGGGCTGAGTTGGACCTCGTGCTTCAACAACTAGCCATGTTTAGAGCCCAGGCCCAGCACCACCAACAGGCCCAGGCCCAACACCTTTACAACCAAACCGCCACTAGCAATGTAAATGTCAGCATCCACGGAGATGAAGCTATGAGCGCCGCAGATCCGTTGACGCTGTACAATTCTAGTGGCGGCGGCGTTGTTATTGGTGGTGGTAATGGGGTTAACCATTACCACTACCTCCAACAAGTAGTGCCGCATGATCAGTATATGATGATGCAAGAGGTGAATGATAGTAGTAGCAATAACGGTACACCATTGCAAGAACATGTTAACATGTGGTCCATGCAGAATTCGCTATCGTCCTTGTCTTTGCAGGGACAAAATAGTAACGGTAGCATTGGTGATGACTATGATCATAAGCCAATGCTTGACATGACTTCTGATGAGAGAAATGAGCTTGGATTTGAGCCTGAAGATTTAGTCCATCGCAG 809 0.4747 MSSSTSTITTRSGNTTTQACAACKYQRRKCAPDCILAPYFPHDRQRQFLNAHKLFGVSNITKIIKFLDPHDKDQAMKTIIFQSDMRANDPVGGCYRYIQELQAQIEFYRAELDLVLQQLAMFRAQAQHHQQAQAQHLYNQTATSNVNVSIHGDEAMSAADPLTLYNSSGGGVVIGGGNGVNHYHYLQQVVPHDQYMMMQEVNDSSSNNGTPLQEHVNMWSMQNSLSSLSLQGQNSNGSIGDDYDHKPMLDMTSDERNELGFEPEDLVHR 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271895g00001 269 Coils Coil 98 118 - -
Stsc271895g00001 269 ProSiteProfiles LOB domain profile. 18 119 IPR004883 -
Stsc271895g00001 269 Pfam Lateral organ boundaries (LOB) domain 19 114 IPR004883 -
Stsc271895g00001 269 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 17 141 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271895g00001 Stsc-Chr271895 62 870 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271895g00001 18 265 AS2 family AT3G13850 48.425 8.47e-63 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Stsc271895g00001 LOB 1.1e-35 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271895g00001 - - vum:124830493 302.367