Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271894g00009 ATGGCATTGCTCCGCAAGTTCTTCTATAAGAAACCCCCAGAGGGGCTTCTAGAAATCAGTGAGAGGGTTTATGTCTTTGATTATTGCTTTACGACTGATATTATGGATGAAGATGAATATAAAGTACATATAGGAGGGATAATTGAGCAACTTTATGATCACTTCCCCGAAGCTTCATATATGGTGTTCAACATGGGGGAGGGAGAAAATCAAAGCCAGATTTCTAGTATTTTGTTTGACTATGATGTGACTGTGATGGACTATCCTCGACAGTATGAAGGTTGCCCGATACTCACCATGGAGATGATCCACCATTTCCTGAGGTCATGTGAAAACTGGCTTCAGCTTGGGCTACAAAACATTATCTTAATGCATTGTGAACGAGGTGGATGGCCCGTTTTAGCATTTATGCTAGCCTCACTCTTGATTTATAGAAAGCAGTTCACGGGAGAGCAGAAAACATTAGAAATGATATACAAGCAAGCTCCGATGGAGCTTTTGCTGTTGATGTCACCATTGAATCCATTGCCTTCACAACTGAGGTATCTTCAATATATATCAAGAAGAAATGTTGGTTCAGAATGGCCTCCTCTAGATAGAGCAGTTACATTGGATTGCGTAGTTATAAGAATCATTCCTAATATGGACGGAGAGGGTGGTTGCCGTCCTATATGTCGGATATATGGACAGGACCCTTTTATGGCAGCTGATCGGACTCCCAAAGTTCTCTTTTCAACTCCAAAAAGGAGCAAACTTGTTCGGTATTACAAGCAGGCTGATACAGAGCTGATTAAGATGGACTTACATTGTCATGTTCAAGGTGATGTTGTTCTTGAGTGTATTACTCTAGAAAATGATTTGGATCGTGAAAAAATGATGTTTCGTGTGATGTTTAACACAGCATTCATAAGGTCAAATATTTTGATGCTTAACCGTGATGACCTTGACATATTATGGGATACTAAAGACCAATTCCCAAAAGATTTAAGAGTAGAGATTCTTTTCTCGGATATGGAAACAAAATCTTCTGTTATTTCAGTTGATCTGCCTTATCTCGAGGAGAAGGATGGCCTACCGATTGAAGCATTTGCTAAGGTTAAAAAGATTTTCAGCCATATTGACTGGCTCGAGACAATTGCAGCATCAAATATCTTTCTGGAAAAATTGGATGGTGCACCTTCTCCCAGAACTGGCCACTTGCGAAAGGATTCATTGCATGGAGGATCTGCACTCGATTCCAAGACACAAGTTGATGTGAAGCGTCCTCCTGACTCCAAATTTGAGGGGACACTTGCTATGTCTTCACTCAAATCTGGTGATGTTTCTCTGGAAAAGAAGGTAGAAGCATTTGAATCAATGGAAAATAATGCTGAGTTTCCTACTTCTATTATTCAAGGGAAACAATCAACTCCCTTAACCGAACCATCCACGGTTGCAAAATCCAATGCAAAGTTGGAAAATGACACCATGCATCCTACATCTGAGGCTCAAAGCATACAATCTATTTCCACATCAACTGATGCAAATTCAGCACTGTTGGAATCAAGCAAAAAGGATACTGATTCATTAAAGTCAGGGGCATTGTTTGAAAATGATAGAAGATCTAAACCCGAACCACTGAAGATGCCAGAAAGTGATTTGAAGGCAGATTCACTGGAAACACATGTAGTTCCGGCAAGTAACATTAAGACTCTCACACCAGTGGGTCTGGGGACACATCTTACTCCCTCAACAGATTCAAGTTCTGCTATTTCAAGGATTGAACCATTAGAAACAAAGGCATTGTCGAAAAATGATACCAAGTATCCTCTATATATGGCTCAGGAGAAAGAGTCTGTTCCTGTAATGAAACCAAGCAGTGTTGCAGACTCAATGGAAAAGAAGATTGGAATGTTAGAGTCAAAGGAAACGGATAATGAATCACTAGAGCGAAAATCATTGCTTGATTCCAATGGTCCTTCATCTATGACTTCTTGCACACAATCAATTCCTTTAACCAAATCCGTGGTTGCAAATTCAAAGGAGGAAGTCAGGGAATTGGAACCAAAGGTGTTGTCAGAAATTGATTCCAAGAGTCTCACATCCATAATAGATCAGAGGAAACAATGTAGTCCCTTCCCTGAACCATCCATTGCCAGTAAGTTTTCTGCTTCCATGGCTCCGGGGAAACAGTCTATTCCCTCGATTGAACCGTATGTTGATGCTAATTCAGTGGAAAAGAAGATTGAACCACTAGAGTCATCGATGAAGGATACTGAATCATTAGAATCAAAGGAATTGCTTAAAAATGAGACCAAGACATCGACATCTATGGCTCAGGAAAAACAGTCTATTTCATTGGTGGAACCATCTATCAAGGCTAATTCCATGGAAAAGATTAGACCATTAGAGTCCACGGTAAAGGATACTGAATCATCAGTATTGAAGGAGGCATCACTTAAAAGTGAGACCAAGAGCTCAACATCTATGGCTCAGGAGAAACAATCTATTCCGATGATTGAACCATCTACCGATGCTAATTCAATGGAAAAGAAGATTGGACCATTAGAGTCTAAGGTAAAAGATACTAAATCATTAGAGTCAGAGCTATCACTTAAAAGTGAGACAAAGAGTTCAACATCTATGCCTCAGGGGGAACAGTCTATTCCCTTGATTGAACCATCTCAGGATGTAAATTCAATAAAGGCCCGAGAATTAGAACCAATGATGTTCTCAAGACCGGATACTAAGAGTCTCGCATTTACGGATCAGAGGAAACAACAGAGTCCCTCACTTGAGCCACCTGTTGATGCAACCACAAGTAAAAAGATGACTGAATCCCAAGAACTGCAGGTTCCTCTTCAGGCTACTAAAAGCATATCTCCACCGGCGCATCAAGCAATTCGACCTGCGATGGCATCAGGTTCACCTTCAGCTATCACAAGATTTCCGAGTTCATCATCAGCTCTTGGAATAATGTCTGTGTTGCAGGATGATGCACCAAAGGATATCAAAGGACAAGTCACACCTGCAGTGAAATCTCCTGTGTCTGGTAGTCCAGACTCAAAGGTGTCGAAATCGGCAGAGTATAGTTCTGAATGTGTTGTAGCACCAACCCCACAGATATTGCATACATCTTCCCCGGTAAAACCTTCGGTGGATGCTGTTGCAACCATAGAGAAGACTTTTGGACTCAATGCTCCTGTGGTTGCTCCTTCCCGTCCTCCATCTGCACCTTCATCACCTCCTCAAAGTGAGCCTGTTGCAAAGTCAATACAACCTACTGATACACATAACCTTGAAAACAAACTAGAAGATAAAGCCCAGAAAACATTACTTACTCCTACCCATGTTCCTCCTCCTCCTCCTCCTCCACCTCCATCTTTAGCCAGACAGACCTCATCAGCTTCAGCTGATGGACCCTTTAGTATGAACAAGGCTGCTGTTGTGCCTATTCCACCTCCCCCACCTCCACTGTCAACCGGACAGATCTCATCATCTACAATACCTCCTCCTCCTCCTCCAATGTCTGGGCTTCTTCCTTCTGCAGTGTCTCGTCCCCCTCCCCCACCTCCTCCTACATCACAAGTTCCACTACCGCCTCCTCCTCCGGCTTCTGCTTCTGCAAATGTTCCACCTGTACCCCCACCTCCACTTCCAAATGGATTGACAAGATCTGGCTCTTGCTCATCGCAAGGTAATGCTAATGTGCCTCCAGTTCCCGGACCTCCTCCAGCTCCTGGACTGCCTCCCATTCCTGGACCGCCTGGAGTTCCTGGGCCGCCTGCTGTTCCTGGATTGCCTGGGAAAGGACGTGGCCTGCTGCGAGCTAATTCGAAAGGTATTTGTATTAAAAAGAGCAATCTGAAACCTTACCATTGGTTAAAGTTAACAAGGGTCATGCAAGGAAGTCTATGGGCTGAGACACAAAAACTTGATGAAGCTTCAAGGACTCCAGAGTTTGACATGACAGAACTTGAGTCTCTTTTCTCTGCTACTGCTCCAAATTCTGATGCAAAAGGAGGAAAATCAAGTCTCCATTCTGCACAGAAAGTGGAAAAAGTCCAACTGATTGAACTCAGGCGTGCATATAACTGCGAGATCATGCTTTCAAAAGTAAAAATACCTTTGGCTGATCTAATGAGCTCTGTGCTAGAATTGGATGAATCGGTGTTAGATATTGATCAGGTTGAAAACCTCATCAAGTTCTGTCCAACCAAGGAAGAGATGGAGCAACTCAAGAACTATACGGGAGATAAGGAGCACTTAGGAAGGTGTGAACAGTTCTTCTTGGAATTAATGAAAGTCCCCAGAGTTGAAAACAAGCTAAGAGTTTTCTCTTTTAAAATTCAATTCAACTCTCAGGTTTCAGAACTCAAGAGAGACTTGAATATTGTGAACAGTGCTTCTGAAGAGATCCGGAGTTCAGTCAAGTTGAAAAGAATCATGCAGACCATTCTTTCTCTTGGCAACGCTTTGAACTACGGAACTGCAAGAGGTTCCGCACTTGGATTTCGATTGGATAGTCTCCTTAAACTCACGGATACACGAGCCAAGAACAACAAGATGACTCTTATGCATTATCTTTGTAAGGTGATTGCTAAAAAGCTTCCGGAGCTTTTAGAATTCCCCCATGACCTAAAGAATTTGGAGGGTGCAACAAAGATACAATTGAAATATTTGGCAGAGGAAATGCAAGCTATTAGTAAAGGACTGGAGAAAGTAGTTCAGGAATTGTCGGCATCAGAGAATGATGGGCCGGTGTCAGAAGACTTCTGCCAGATACTAAAGGGATTTCTTGCTAATGGGGAAGCCGAAGTGAGGTCTTTGGCTCAACTCTATGCCAATGTGGGTAGAAATGCAGATGCATTGGCTTTGTACTTCGGAGAAGATCCAGCACGTGTTCCATTTGAACAAGTTGTATCTACTCTGCTCAACTTTGTGAGGATGTTCGTCAAAGCGCATGAAGAAAACTGTAAGCAGATGGAATTCGATAAGAAGAAAGCCGAGAAGGAAGCAGAAAATGAGAAGCTGAAGGTACATCCTAAGGAGTCCAAAAATGTGATGCCGCCGGCCATCGAAAGCGGGGATATCCAATATGAACAGATGCATTTTTCTTAA 5100 0.4255 MALLRKFFYKKPPEGLLEISERVYVFDYCFTTDIMDEDEYKVHIGGIIEQLYDHFPEASYMVFNMGEGENQSQISSILFDYDVTVMDYPRQYEGCPILTMEMIHHFLRSCENWLQLGLQNIILMHCERGGWPVLAFMLASLLIYRKQFTGEQKTLEMIYKQAPMELLLLMSPLNPLPSQLRYLQYISRRNVGSEWPPLDRAVTLDCVVIRIIPNMDGEGGCRPICRIYGQDPFMAADRTPKVLFSTPKRSKLVRYYKQADTELIKMDLHCHVQGDVVLECITLENDLDREKMMFRVMFNTAFIRSNILMLNRDDLDILWDTKDQFPKDLRVEILFSDMETKSSVISVDLPYLEEKDGLPIEAFAKVKKIFSHIDWLETIAASNIFLEKLDGAPSPRTGHLRKDSLHGGSALDSKTQVDVKRPPDSKFEGTLAMSSLKSGDVSLEKKVEAFESMENNAEFPTSIIQGKQSTPLTEPSTVAKSNAKLENDTMHPTSEAQSIQSISTSTDANSALLESSKKDTDSLKSGALFENDRRSKPEPLKMPESDLKADSLETHVVPASNIKTLTPVGLGTHLTPSTDSSSAISRIEPLETKALSKNDTKYPLYMAQEKESVPVMKPSSVADSMEKKIGMLESKETDNESLERKSLLDSNGPSSMTSCTQSIPLTKSVVANSKEEVRELEPKVLSEIDSKSLTSIIDQRKQCSPFPEPSIASKFSASMAPGKQSIPSIEPYVDANSVEKKIEPLESSMKDTESLESKELLKNETKTSTSMAQEKQSISLVEPSIKANSMEKIRPLESTVKDTESSVLKEASLKSETKSSTSMAQEKQSIPMIEPSTDANSMEKKIGPLESKVKDTKSLESELSLKSETKSSTSMPQGEQSIPLIEPSQDVNSIKARELEPMMFSRPDTKSLAFTDQRKQQSPSLEPPVDATTSKKMTESQELQVPLQATKSISPPAHQAIRPAMASGSPSAITRFPSSSSALGIMSVLQDDAPKDIKGQVTPAVKSPVSGSPDSKVSKSAEYSSECVVAPTPQILHTSSPVKPSVDAVATIEKTFGLNAPVVAPSRPPSAPSSPPQSEPVAKSIQPTDTHNLENKLEDKAQKTLLTPTHVPPPPPPPPPSLARQTSSASADGPFSMNKAAVVPIPPPPPPLSTGQISSSTIPPPPPPMSGLLPSAVSRPPPPPPPTSQVPLPPPPPASASANVPPVPPPPLPNGLTRSGSCSSQGNANVPPVPGPPPAPGLPPIPGPPGVPGPPAVPGLPGKGRGLLRANSKGICIKKSNLKPYHWLKLTRVMQGSLWAETQKLDEASRTPEFDMTELESLFSATAPNSDAKGGKSSLHSAQKVEKVQLIELRRAYNCEIMLSKVKIPLADLMSSVLELDESVLDIDQVENLIKFCPTKEEMEQLKNYTGDKEHLGRCEQFFLELMKVPRVENKLRVFSFKIQFNSQVSELKRDLNIVNSASEEIRSSVKLKRIMQTILSLGNALNYGTARGSALGFRLDSLLKLTDTRAKNNKMTLMHYLCKVIAKKLPELLEFPHDLKNLEGATKIQLKYLAEEMQAISKGLEKVVQELSASENDGPVSEDFCQILKGFLANGEAEVRSLAQLYANVGRNADALALYFGEDPARVPFEQVVSTLLNFVRMFVKAHEENCKQMEFDKKKAEKEAENEKLKVHPKESKNVMPPAIESGDIQYEQMHFS 1699
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271894g00009 1699 SMART PTEN_C2_2 197 337 IPR014020 -
Stsc271894g00009 1699 MobiDBLite consensus disorder prediction 743 763 - -
Stsc271894g00009 1699 MobiDBLite consensus disorder prediction 743 955 - -
Stsc271894g00009 1699 MobiDBLite consensus disorder prediction 845 864 - -
Stsc271894g00009 1699 Coils Coil 625 645 - -
Stsc271894g00009 1699 MobiDBLite consensus disorder prediction 517 547 - -
Stsc271894g00009 1699 PANTHER FORMIN-J 1 1676 - -
Stsc271894g00009 1699 MobiDBLite consensus disorder prediction 764 784 - -
Stsc271894g00009 1699 MobiDBLite consensus disorder prediction 812 836 - -
Stsc271894g00009 1699 MobiDBLite consensus disorder prediction 795 811 - -
Stsc271894g00009 1699 MobiDBLite consensus disorder prediction 1077 1091 - -
Stsc271894g00009 1699 MobiDBLite consensus disorder prediction 633 661 - -
Stsc271894g00009 1699 Pfam Formin Homology 2 Domain 1278 1644 IPR015425 -
Stsc271894g00009 1699 MobiDBLite consensus disorder prediction 396 429 - -
Stsc271894g00009 1699 Gene3D Protein tyrosine phosphatase superfamily 9 191 IPR029021 -
Stsc271894g00009 1699 MobiDBLite consensus disorder prediction 484 516 - -
Stsc271894g00009 1699 MobiDBLite consensus disorder prediction 910 955 - -
Stsc271894g00009 1699 MobiDBLite consensus disorder prediction 1108 1123 - -
Stsc271894g00009 1699 Gene3D Formin, FH2 domain 1291 1681 IPR042201 -
Stsc271894g00009 1699 ProSiteProfiles Formin homology-2 (FH2) domain profile. 1272 1670 IPR015425 -
Stsc271894g00009 1699 MobiDBLite consensus disorder prediction 1059 1265 - -
Stsc271894g00009 1699 Coils Coil 1645 1672 - -
Stsc271894g00009 1699 MobiDBLite consensus disorder prediction 1141 1215 - -
Stsc271894g00009 1699 MobiDBLite consensus disorder prediction 994 1025 - -
Stsc271894g00009 1699 MobiDBLite consensus disorder prediction 646 661 - -
Stsc271894g00009 1699 MobiDBLite consensus disorder prediction 865 888 - -
Stsc271894g00009 1699 MobiDBLite consensus disorder prediction 484 547 - -
Stsc271894g00009 1699 SMART it6_source 1272 1699 IPR015425 -
Stsc271894g00009 1699 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 12 187 IPR029021 -
Stsc271894g00009 1699 Gene3D - 196 341 - -
Stsc271894g00009 1699 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 202 338 IPR035892 -
Stsc271894g00009 1699 ProSiteProfiles C2 tensin-type domain profile. 199 338 IPR014020 -
Stsc271894g00009 1699 Pfam C2 domain of PTEN tumour-suppressor protein 200 336 IPR014020 -
Stsc271894g00009 1699 MobiDBLite consensus disorder prediction 1663 1686 - -
Stsc271894g00009 1699 MobiDBLite consensus disorder prediction 1663 1677 - -
Stsc271894g00009 1699 MobiDBLite consensus disorder prediction 1005 1025 - -
Stsc271894g00009 1699 SUPERFAMILY Formin homology 2 domain (FH2 domain) 1181 1664 - -
Stsc271894g00009 1699 MobiDBLite consensus disorder prediction 1230 1259 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271894g00009 Stsc-Chr271894 96477 107711 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271894g00009 1 397 FH2 protein (formin) Gene Family AT2G25050 66.422 0.0 614
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271894g00009 - - vvo:131596325 1602.03