Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271894g00008 ATGGATGAAAAGGTGGAAGCTCTTCAAGTGGAATTAGAACGTGTGAAAGAGGAGAATAGTGATCTAAGATTGATGCTTGAGGTTCTAAGCAACAAACACAAAAACCTTCAATCCCAAATTCGAGATATAAACAAGGAATCGGAGCAAATAATAGGCTTCAATAATAATTCAATGCATATTGTTGACTACTCCACAAATTGTAAGAGACCAAGACTAGTAGAGTTTCCGACAGCTAAAAAACCATTACAAATCTTTGTCAGAACCAACCCCAACGATGATACTTTGATAATAAGAGATGGATATCAATGGAGGAAGTATGGGCAGAAGGTTACCAAAGACAATGCTTCACCAAGAGCCTACTTCAGGTGTTCCATGGCTCCTAGTTGCCCAGCCAAGAAGAAGGTGCAAAAATGCATAGATGACAAGTCTATATTAGTTGCAACCTATGATGGAGAACACAACCATGCTGCAATTCATGATTCTTTGATACCTTCTTCATCCACACCCAAAGGCTCAGTGGCTAATAACATTAATAATAATTATTGTAAAAACAATGATTTACCTTTTACAATCCTAGAAAATGATGACAAAAAATACTGGCCTCATCAAAGAGATTCAGTAAGACTATGTTGTGATGGTGATGTTACTATGCAAAAAAGTGACCATAGAGGCAACACCAAAATTGAAGAATATGCAAGTTCCTTAATCAAAGATCCTGAGTTCACTGCAGCATTAGCAGAAGCAGTTGCGCGCACCATCACTGGTCAGAGTAAGGAACAAGACCTAAACCTCAATTTGGGGCTTCCAGAAGAATGA 816 0.3824 MDEKVEALQVELERVKEENSDLRLMLEVLSNKHKNLQSQIRDINKESEQIIGFNNNSMHIVDYSTNCKRPRLVEFPTAKKPLQIFVRTNPNDDTLIIRDGYQWRKYGQKVTKDNASPRAYFRCSMAPSCPAKKKVQKCIDDKSILVATYDGEHNHAAIHDSLIPSSSTPKGSVANNINNNYCKNNDLPFTILENDDKKYWPHQRDSVRLCCDGDVTMQKSDHRGNTKIEEYASSLIKDPEFTAALAEAVARTITGQSKEQDLNLNLGLPEE 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271894g00008 271 ProSiteProfiles WRKY domain profile. 92 158 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc271894g00008 271 SMART WRKY_cls 97 157 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc271894g00008 271 Coils Coil 5 46 - -
Stsc271894g00008 271 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 5 256 IPR044810 GO:0003700
Stsc271894g00008 271 Gene3D WRKY domain 83 157 IPR036576 GO:0003700|GO:0006355|GO:0043565
Stsc271894g00008 271 Pfam WRKY DNA -binding domain 99 155 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc271894g00008 271 SUPERFAMILY WRKY DNA-binding domain 93 156 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271894g00008 Stsc-Chr271894 92917 94894 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271894g00008 2 249 WRKY Transcription Factor Family AT1G80840 36.331 8.00e-41 141
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Stsc271894g00008 WRKY 9e-23 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271894g00008 - - ccaj:109791737 297.36