Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271894g00007 ATGGATTCAACATGCGTTGATACTTCACTCAATCTAAATCTTTCTCCGTCTCCGCTGCCTCATACCAACGCTACTGAGGCAGAAGTATTTCTGGTTGAAGAGTTACATCGTTTGAGTGGTGAGAACAAGAGGCTTACGGAAACGTTGACCCACATGTGTGTTAGCTATGAAGCTATGCAAAAGCGTCTGACCAAATTGATGAACACATCATCAGATTGTGATGATCACCTTCAGTCAAGGAAGAGAAAAGCTGAAAGCTTTGAAAATTGTTGTAATGAGGAGGATTCTTCATTGCTCATCAAAAGGCCTAATCATAACATTATTGTTAATAATCATAATAAGGTTTCAAAGGTTCTTGTGAAGACAGATGCATCTGATAATAGCTTGTATGTGATGGACGGATATCAATGGAGGAAATATGGTCAAAAGGTCACTAGAGATAACCCTTCTCCAAGAGCATACTTTCGTTGCTCCTTCGCCCCAAGTTGCCCTGTCAAAAAGAAGGTGCAAAGAAGTGTTGAAGACCCAACAATACTTGTAGCAACATACGAAGGACAACACAACCATGGTCGAAGCCAAACTGAAATATCACTTGTCTCATCCCAAAGCCAATTAAGTGATACAATAATCCCTCCTTTAGTTTCCTCACCATCATGCATTACTTCATCATCTCCAACTACTACTACTCTTGACTTGGTCAAAAATTCAAGTTCGGTGATTGACTTTGACCATCATCATAATACTAAAAATAAATCTTCTTCTCTTTCCCCTTCTTCTCCTTCTTCTATCCATCAGTTTTTGGTTCAAGAAATGGCCACTTCCTTGACAAGTGATCCTAACTTTACGGCAGCACTTGCCACTGCCATTTCAGGAAGAATTCTAAGACAGGCTTCTCTAGAAAAATTGTGA 909 0.3971 MDSTCVDTSLNLNLSPSPLPHTNATEAEVFLVEELHRLSGENKRLTETLTHMCVSYEAMQKRLTKLMNTSSDCDDHLQSRKRKAESFENCCNEEDSSLLIKRPNHNIIVNNHNKVSKVLVKTDASDNSLYVMDGYQWRKYGQKVTRDNPSPRAYFRCSFAPSCPVKKKVQRSVEDPTILVATYEGQHNHGRSQTEISLVSSQSQLSDTIIPPLVSSPSCITSSSPTTTTLDLVKNSSSVIDFDHHHNTKNKSSSLSPSSPSSIHQFLVQEMATSLTSDPNFTAALATAISGRILRQASLEKL 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271894g00007 302 SUPERFAMILY WRKY DNA-binding domain 129 191 IPR036576 GO:0003700|GO:0006355|GO:0043565
Stsc271894g00007 302 FunFam WRKY transcription factor 40 116 193 - -
Stsc271894g00007 302 Gene3D WRKY domain 114 191 IPR036576 GO:0003700|GO:0006355|GO:0043565
Stsc271894g00007 302 ProSiteProfiles WRKY domain profile. 133 192 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc271894g00007 302 SMART WRKY_cls 131 191 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc271894g00007 302 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 30 293 IPR044810 GO:0003700
Stsc271894g00007 302 Pfam WRKY DNA -binding domain 133 189 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271894g00007 Stsc-Chr271894 71616 73703 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271894g00007 3 301 WRKY Transcription Factor Family AT1G80840 41.159 2.38e-66 208
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Stsc271894g00007 WRKY 1.9e-23 CL0274