Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271893g00002 ATGCCTTCTCTCAAAGATGAGTGGAAGGAGCATCTTCTGGAGGTGGATGGCGATGGACACGACCACCCCAAAATGGAGGTACGCAATCTCCGGAGAGTCTCCGATGCCGGAGTCCCGATCCTGAAGGGCATCAGCCTGGAGATCCCAAAGGGAGTCATAGTCGGAGTCATAGGCCCCAGCGGCAGCGGAAAGTCAACGCTCCTCAGAGCACTCAACCGTCTCTGGGAGCCTCCTTCCTCCTCAGTCTTCCTTGATTCCCAAGACATCACCCACCTCGACGTCCTCTCCCTCCGTCGCAAAGTCGGCATGCTATTTCAACTCCCCGCCCTATTCGAAGGCACCGTGGCGGATAACGTCCGCTACGGGCCCCACCTGGCGGGGAAGAAGCTTACAGATGACGAGGTCAGTAAGCTTCTTATGCTGGCCGACTTAGATGGATCGTTCCTTCACAAGTCGGCCAGCGAACTCTCTGTGGGTCAAGCACAGAGAGTAGCATTAGCAAGAACCCTTGCTAATTCCCCTGAGGTTTTGCTTCTTGACGAGCCAACGAGTGCGTTGGATCCAATCTCCACGGAGAATATAGAAGCTGCGCTCGTGAAGCTCAACAAGAACAGTGGCATGACCATGATTATGGTGTCTCATAGCATTAAACAGATACAGAGGATTGCTCACATGGTTTGCCTCCTTGTTGATGGTGAGATTGTTGAGGTTCTTGAACCTCAACAACTCTCACAAGCCAACCATCCCATGGCTCGGAGGTTTCTTGAACTCACTAATTAA 780 0.5282 MPSLKDEWKEHLLEVDGDGHDHPKMEVRNLRRVSDAGVPILKGISLEIPKGVIVGVIGPSGSGKSTLLRALNRLWEPPSSSVFLDSQDITHLDVLSLRRKVGMLFQLPALFEGTVADNVRYGPHLAGKKLTDDEVSKLLMLADLDGSFLHKSASELSVGQAQRVALARTLANSPEVLLLDEPTSALDPISTENIEAALVKLNKNSGMTMIMVSHSIKQIQRIAHMVCLLVDGEIVEVLEPQQLSQANHPMARRFLELTN 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271893g00002 259 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 24 246 IPR027417 -
Stsc271893g00002 259 ProSitePatterns ABC transporters family signature. 156 170 IPR017871 GO:0005524|GO:0016887
Stsc271893g00002 259 FunFam ABC transporter, ATP-binding protein 22 254 - -
Stsc271893g00002 259 Gene3D - 23 258 IPR027417 -
Stsc271893g00002 259 Pfam ABC transporter 41 184 IPR003439 GO:0005524
Stsc271893g00002 259 CDD ABC_PstB_phosphate_transporter 25 243 IPR005670 GO:0005315|GO:0016020|GO:0035435
Stsc271893g00002 259 PANTHER ABC TRANSPORTER I FAMILY MEMBER 17 4 258 IPR005670 GO:0005315|GO:0016020|GO:0035435
Stsc271893g00002 259 SMART AAA_5 50 236 IPR003593 GO:0016887
Stsc271893g00002 259 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 25 256 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271893g00002 Stsc-Chr271893 17604 18874 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271893g00002 38 249 Calmodulin-binding Proteins AT2G36910 33.333 2.21e-31 120
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271893g00002 K02068 - gmx:100791365 394.43