Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271892g00020 ATGATTTCTTCTGGGCTGAACTTGGTGATGACTGTGATTGGATTCGCGGTGAGCACCATGTTCATTGTGTTCGTGTGCACGAGGCTTGTCTGTGCTCGAATCCACTTGAATGCTTCAAGGAGATCCTTTCCCATTGCTTCCAGATCCAATCTCACCATGATGGAACGGGGTTGGCATGGTCTTGAACGCACAACTGTAGCTAAATTTCCAACAAAGAAGTACAGTGACAAGTTCTTTTCTGCTGCAGAAAATTCTCAGTGTACAGTCTGTCTTTCGGAGTACCAAGGTGAAGATATTCTGCGAATCCTCCCCTACTGTGGACATTCATTCCATGTGACCTGCATAGACTTATGGCTGCAGCAGAATTCTACTTGCCCAGTTTGTCGAATATCATTGAGAGAGTTTACCGAGAGAAAGCGGTTAATGCAACCCTTATTCAGCTCTTCTTTACGACCTCATCGTGGCGCAGAACCCATTGAGAACCCTCATTATCTCTGTATTATGGGTGATAATGGGTTACCATCAAGAACCCCAGACAACCGTGGGGCGAACGTGATTCAAGAGGACAGTTTTCCATCCGGTGGCGGTGGAGCTGGAGCAGCTGCTACAGATAGCATCACCTGTCTAAGTCCGGACGATCTTGTTAAAGATGAAGAGAAGAAGCATGTAGAGAGCCCATCAAACTTCTAG 690 0.4652 MISSGLNLVMTVIGFAVSTMFIVFVCTRLVCARIHLNASRRSFPIASRSNLTMMERGWHGLERTTVAKFPTKKYSDKFFSAAENSQCTVCLSEYQGEDILRILPYCGHSFHVTCIDLWLQQNSTCPVCRISLREFTERKRLMQPLFSSSLRPHRGAEPIENPHYLCIMGDNGLPSRTPDNRGANVIQEDSFPSGGGGAGAAATDSITCLSPDDLVKDEEKKHVESPSNF 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271892g00020 229 SUPERFAMILY RING/U-box 80 135 - -
Stsc271892g00020 229 CDD RING-H2_EL5-like 86 129 - -
Stsc271892g00020 229 MobiDBLite consensus disorder prediction 177 204 - -
Stsc271892g00020 229 Pfam Ring finger domain 86 129 IPR001841 -
Stsc271892g00020 229 SMART ring_2 87 128 IPR001841 -
Stsc271892g00020 229 PANTHER OS11G0150450 PROTEIN 1 186 - -
Stsc271892g00020 229 FunFam E3 ubiquitin-protein ligase ATL6 49 135 - -
Stsc271892g00020 229 ProSiteProfiles Zinc finger RING-type profile. 87 129 IPR001841 -
Stsc271892g00020 229 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 48 134 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271892g00020 Stsc-Chr271892 146289 149065 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271892g00020 45 132 C3H Transcription Factor Family AT4G10150 42.045 1.76e-19 82.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271892g00020 - - gmx:100786109 385.571