Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271892g00018 ATGGACACTGCTGCTGCTTCCACCATGGACAAAGCAGGATGGCTCGCCTTCGACACCGGCACCAACCGGTGGCCTCGCCAGGAGACTCTCTCCCTTCTGGAGATCAGATCTCGTCTCGATTCCAAGTTCAGAGAAAATAATCAAAAAGCTCCCTTGTGGAACGAGATTTCTAGGATAATGGCTGAGGAATTTGGGTACCAAAGGAGTGGCAAGAAATGCAAAGAGAAGTTTGAGAATTTGTACAAGTATTACAAGAAGACCAAGGAAGGCAAAGCTAGTAGACAAGATGGTAAACACTACAGATTCTTCAGGCAACTTGAAGCTATATGCGGCAGCGGCGGTGGCGGTGATTCATCAAACACTACTACTCATAACCTTCATCATGCTTCAGCTTCAAATACTACTGCTTCAGCTTCTGTTGCTGGTGCTGCTACTACTGTTCAAACCCCAAGAAGCTTCAATGGTGATCATCATCATCATAATAACTTGATCAAGTGTTCAGAGAGTTTGAGTTTCTCTAACTCATGTGAACTTGAGACATCATCATCTGAGAACAACAATGATGAGGATCTTTCAGCCATTGCATACATGATGAAGCACTCCTCATCTAACAAGCAGAAAGGGGTGGTGCAATTGGATGACGATCATGATGATCATGGTGGTGGTGGAAGGGTGAGAAGGAGAAGAAGCTTGAGGGCAAAAGTGGAAGAGATAGTTGGGTCCCACATGAGGAAGATAATGGAGACACAAGATGCATGGATGGAGAGAATGATAAGTGTTGTTGAGCAAAGGGAGAAGGAGATGGCATCCATGGAGGAAGAGAGGAAGAAGAAAGAGTCAATGAGGTTTGACCAAGAGGTTAGTGAGCTTTGGGCAAAAGAGAGAGCTTGGGTTGAAGCAAGGGATGCTGCATTGATTCAAGTTGTAAGAAAACACATTGAAAATAATGGAAACAATAATAATAAAGAAGAGTTTGAGATTATTGAAGCATTGGCACCACAATGCAATAACAAGAACAACAAGGGCCAATCTGCAAATAATAATAATGGGAGGTGGAGTGAGATGGAGATATCAAGCTTGATACAGTTGAGGACAGGGTTTGAAGAGAGAATGAGGGAGAATAATAATAATAACAATAATTATTATTTTGAGAGTAATAATTGGGAAGAGATATCAGGAAAATTGGGATGTTTGGGGTTTGAGAGAAGTTCAGATGAGTGTAAGCAACTTTGGGATGAGATCAGCATCTCACTTGGGAGGACAAATACTACTACTACTTCTTCTGCTGTTGCCAAAAACAATAGGCCTTGGTGTTTGGGACTCAAGCTCTCTGATGATGATGATGATCATGATCATCATGGCAATTAA 1368 0.4225 MDTAAASTMDKAGWLAFDTGTNRWPRQETLSLLEIRSRLDSKFRENNQKAPLWNEISRIMAEEFGYQRSGKKCKEKFENLYKYYKKTKEGKASRQDGKHYRFFRQLEAICGSGGGGDSSNTTTHNLHHASASNTTASASVAGAATTVQTPRSFNGDHHHHNNLIKCSESLSFSNSCELETSSSENNNDEDLSAIAYMMKHSSSNKQKGVVQLDDDHDDHGGGGRVRRRRSLRAKVEEIVGSHMRKIMETQDAWMERMISVVEQREKEMASMEEERKKKESMRFDQEVSELWAKERAWVEARDAALIQVVRKHIENNGNNNNKEEFEIIEALAPQCNNKNNKGQSANNNNGRWSEMEISSLIQLRTGFEERMRENNNNNNNYYFESNNWEEISGKLGCLGFERSSDECKQLWDEISISLGRTNTTTTSSAVAKNNRPWCLGLKLSDDDDDHDHHGN 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271892g00018 455 Pfam Myb/SANT-like DNA-binding domain 22 109 IPR044822 -
Stsc271892g00018 455 Pfam Myb/SANT-like DNA-binding domain 351 416 IPR044822 -
Stsc271892g00018 455 FunFam trihelix transcription factor PTL-like 24 86 - -
Stsc271892g00018 455 CDD GT1 22 88 - -
Stsc271892g00018 455 ProSiteProfiles Myb-like domain profile. 344 415 IPR001005 -
Stsc271892g00018 455 SMART sant 348 417 IPR001005 -
Stsc271892g00018 455 SMART sant 20 83 IPR001005 -
Stsc271892g00018 455 PANTHER FI21293P1 18 416 - -
Stsc271892g00018 455 Coils Coil 254 281 - -
Stsc271892g00018 455 ProSiteProfiles Myb-like domain profile. 22 81 IPR001005 -
Stsc271892g00018 455 Gene3D - 352 417 - -
Stsc271892g00018 455 Gene3D - 24 86 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271892g00018 Stsc-Chr271892 130383 133195 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271892g00018 23 415 Trihelix Transcription Factor Family AT5G03680 39.151 4.27e-77 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Stsc271892g00018 Myb_DNA-bind_4 3.6e-19 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271892g00018 - - ahf:112711553 609.372