Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271892g00007 ATGGGTTTGGTTGCGGACGCGGTGAAGAGAGTGACAAGCGGCTTGAACCAGCCAGTTTCGCGATTCGTCTCGCATACGAATCTTGATTTCTTGCTTGAGGCGGAGCATGTTATTGCTGAAGGACATGGTGTTGTTCTTGTTAATACAGATGATGCAGGCATGTTGATGATAACAAATTTTCGCCTTCTTTTTCTTAGTGAGGGAACTCGTAAAGTTATTGCCCTTGGAACAATACCACTTGCAACCATTGAGAAGTTTAACAAGACAGTTGCAAAGATTCAATCAAATGCTCGCCAAGAGAAGACACCACCTCAGAGATTGCTCCAGGTGATTGGCAAAGATATGAGAATTATAGTCTTCGGTTTCAGACCTCGTACAAAACAGAGACGTATAATATTTGATGCACTACTAAGGTGTACGAAACCAGCAAGATTGTGGGATCTTTATGCTTTTGCATGTGGACCTTCTAGATTTAAGAGCACAAATCCACAAGTGCGCTTATTGGATGAGTATATTCGGCTTCTTGGCAAACTTTCTCGTGCATCAGCCAACATGATCGAAAGTGGGTCCTTCACCTTGTCAAATGACTTATGGAGAATAAGTAGCATAAACTCCAACTATAAAATGTGTCCGAGTTATCCATTTGCTTTGCTTGTTCCCAAGATTATTAGTGATGATGAAGTTCTGTTGGCTTCCAACTTTCGTGCAAGGGGTCGGCTGCCTGTAGTTTCATGGTGTCATCTTGGTACTGGAGCAGTTCTTGCACGTTCGTCCCAACCCTTAGTTGGTCTGATGATGAATATGAGGAGCAACATGGATGAAAAACTTGTGGCTGCACTTTGCAGCAAACTTGATGATGGCTCACGGAGAAAGCTATATATTGCTGATGCAAGGCCTAGGAAAAACGCATTAGCTAATGGGGCCATGGGTGGTGGCTCAGAATCATCATCAAACTATTTTCAGTCAGAGATAGTGTTTTTTGGGATAGACAACATACATGCTATGAGAGACAGCTTTGCTCGGCTCAGAGAATACTTGGATACCCATGGAAGAGCCTCATCAGATGGAATGTCGTCATTTTTGAGACATGGTGGTTCAACGTGGGGTGGAGGCAACTTAAGTAGCATGTCTGCTTCAGTGTCAACCCTTGGGGACAGTGGATGGTTACTGCATGTTCAAAATGTTTTGGCTGGTTCAGCTTGGATTGCTGCTCGGATTGCTATGGAAAACGCTTCTGTTCTTGTGCATTGCAGCGATGGTTGGGATAGAACAAGTCAGTTGGCACTTGTTGAAAAAGATTGGTTAGCATTTGGTCATCCATTTTCTGATCGTGTTGGATTGCCAGCTTTCTCTGGAAGTGAGTTAACTAGGCAGCCTTCAACTGGCAATATCGCAGCATCACCTGGACGGCAGTCATCTGGAGCATTTACATCTCCAGTTCCAACGTCTTCTCATGCACAAACTTCTAACAACTACTCTCCCATCTTTTTGCAGTGGGTTGATTGCGTTTCTCAATTGTTGCGGATGTATCCCTTTGCTTTTGAGTTTTCTGCGGCTTTTCTGGTGGACTTCTTAGACTGCATGCTTTCATGTCGTTTTGGAAATTTCTTATGTAACAGCGAGAAGGAGAGGCTGCAATGCAATATTTCTGAAAGTTGTGGATGTATGTGGGTATACTTGGCTGATTTGCGTGCATTGGAAGGAGGTTCCCATGTGCATCATAATCCCTTCTATGACCCACTCAAGCACAATGGTCCTCTTCTGCCCCCAGCAGCAGCATTAGCCCCAACATTATGGCCCCAATTCCATCTTCGTTGGGCCTGCCCTGAAGAAGCACAAGCTGGGGAGATTGAAGCAAAATGTAGGAAGATAATAATGAAATACGCCGAGTTGCAGAAGGCTAAAGAAGTGGCAGAACGAAAATCAAAAGAAATTTCGAATGCCATGGAATCACTGAATGCAGAATTACAAATTGTGAAGCAGCAAAACACCTCAGCTATGAATATGGCCAATAGGGCAAACAAAGAAAACATGTCTATAAAGCGTGCAATTCAGTCAATTGGGTGCAAGGTTCACTTCTCCAATAGTGGCGATTGCATTGTGGACATTGAAAGTAATCCATTGGGAACAGCACAAAACTTCTTATATTGCTCCAGGAAAGGACCAGATGGTATCATGCTTGATGACCAAAAGGATCTGGCTGTTGCAGTAACAGTTACAGCTGATGATGACGACAATGATGGGAGCAACCCTATCGGTCGAGTATGTGAGAACCTATGCCCGTTTCGCTCTGCAGATGGAGGCTGCAGATGGCCCAATGGTGGTTGTGCACAACGAAACAGCCAGTTTGTTGGTCTTAGGGCAAATTTTGATGCATTTGACAAACTTTCAATTGACGATAGTTATTTCAAGCCTAAGTAA 2421 0.4387 MGLVADAVKRVTSGLNQPVSRFVSHTNLDFLLEAEHVIAEGHGVVLVNTDDAGMLMITNFRLLFLSEGTRKVIALGTIPLATIEKFNKTVAKIQSNARQEKTPPQRLLQVIGKDMRIIVFGFRPRTKQRRIIFDALLRCTKPARLWDLYAFACGPSRFKSTNPQVRLLDEYIRLLGKLSRASANMIESGSFTLSNDLWRISSINSNYKMCPSYPFALLVPKIISDDEVLLASNFRARGRLPVVSWCHLGTGAVLARSSQPLVGLMMNMRSNMDEKLVAALCSKLDDGSRRKLYIADARPRKNALANGAMGGGSESSSNYFQSEIVFFGIDNIHAMRDSFARLREYLDTHGRASSDGMSSFLRHGGSTWGGGNLSSMSASVSTLGDSGWLLHVQNVLAGSAWIAARIAMENASVLVHCSDGWDRTSQLALVEKDWLAFGHPFSDRVGLPAFSGSELTRQPSTGNIAASPGRQSSGAFTSPVPTSSHAQTSNNYSPIFLQWVDCVSQLLRMYPFAFEFSAAFLVDFLDCMLSCRFGNFLCNSEKERLQCNISESCGCMWVYLADLRALEGGSHVHHNPFYDPLKHNGPLLPPAAALAPTLWPQFHLRWACPEEAQAGEIEAKCRKIIMKYAELQKAKEVAERKSKEISNAMESLNAELQIVKQQNTSAMNMANRANKENMSIKRAIQSIGCKVHFSNSGDCIVDIESNPLGTAQNFLYCSRKGPDGIMLDDQKDLAVAVTVTADDDDNDGSNPIGRVCENLCPFRSADGGCRWPNGGCAQRNSQFVGLRANFDAFDKLSIDDSYFKPK 806
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271892g00007 806 PANTHER MYOTUBULARIN-RELATED 38 692 IPR030564 -
Stsc271892g00007 806 Coils Coil 621 669 - -
Stsc271892g00007 806 Gene3D - 43 140 IPR011993 -
Stsc271892g00007 806 ProSitePatterns Tyrosine specific protein phosphatases active site. 415 425 IPR016130 GO:0016311|GO:0016791
Stsc271892g00007 806 ProSiteProfiles Myotubularin phosphatase domain. 175 603 IPR010569 -
Stsc271892g00007 806 CDD PTP-MTM-like 238 505 - -
Stsc271892g00007 806 MobiDBLite consensus disorder prediction 461 487 - -
Stsc271892g00007 806 SUPERFAMILY PH domain-like 31 153 - -
Stsc271892g00007 806 SMART gram2001c 20 90 IPR004182 -
Stsc271892g00007 806 Pfam Myotubularin-like phosphatase domain 165 427 IPR010569 -
Stsc271892g00007 806 Pfam Myotubularin-like phosphatase domain 428 544 IPR010569 -
Stsc271892g00007 806 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 191 607 IPR029021 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271892g00007 Stsc-Chr271892 38954 48686 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271892g00007 24 806 Protein tyrosine phosphatase (PTP) family AT3G10550 66.296 0.0 1072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271892g00007 K18081 - gmx:100781842 1264.6