Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271891g00035 ATGATTCAGATGCCTCAAGTGAACTCCAAAGTGTTCTACTTTCCACAAGGGCATGCAGAACACGCTCAAACCGCCATTGATGTTCTCTCAACTCCTTCTTTGAGGGTTCCACCACTCATCCCTTGCAGGGTTGCATCAGTGAGATTCATGGCTGACCCTGAAACAGATGAAGTTTTTGCAAAGATAAAGCTTGTTCCAGTGAGAAGTTCAGAGCTTGATCAAAACGACAGCGTCTTGGAGGGTGAAGTTGTTGTGGAGAATCAAGAAAAGCCTGCATCTTTTGCAAAGACTTTGACCCAATCTGATGCTAACAATGGTGGGGGTTTCTCAGTCCCTCGTTACTGTGCAGAAACCATCTTCCCCCGGCTCGATTACTCGGCTGAGCCGCCAGTTCAGACGGTGGTGGCAAAGGATGTTCATGGTGAGCTATGGAAGTTTAGGCATATATACAGAGGTACACCAAGGAGGCACTTGCTTACAACTGGTTGGAGCACCTTTGTGAACCATAAGAAGCTTGTAGCTGGTGATTCTGTGGTGTTTTTGAGGGCTGAAAATGGTGATCTTTGTGTTGGGATTAGGAGGGCAAAAAGGGTAATTGGGATTGGAATTGGTGGAAATGGGGGTGGTTGTGAGGGTTCATCCTTGTGGAGTTCAGCTTCTTCTGGTAATGGTAATGGTAATGGAGGGCCTTATGGAGCATTGTCCATGTTCTTGAGAGAGGAGAACAACAAGCTTTTGAGGAATAATAGTAATAATGGAAGGTGCTCTCCTTCTTCTTCTTCTTCAAGGGTGAGAGCTGAAGATGTTGTGGAAGCTGTGTCAATGGCTGCAAGGAACCAACCATTTGAGGTTGTGTATTCTCCAAGGGCAAACACTCCTGAGTTCTGCATTAAGGCTTCTTCTGTGAGTTCTGCAATGAGGATCCAATGGTGTCCTGGCATGAGGTTCAAGATGCCCTTTGAGACTGAGGATTCTTCTAGAATCAGCTGGTTCATGGGGACTATTGCTTCGGTTCAGGTTGTTGATCCTATCCGCTGGCCGAATTCGCCTTGGCGACTTCTTCAGGTTACTTGGGATGAACCTGATTTGCTACAAAATGTGAAGCGAGTTAGCCCGTGGTTGGTTGAATTGGTATCGAACATGCCAGTCATCAATCTCTCGCCGTTCTCTCCACCACCGAGGAAGAAGCTGCGGTTTCCACAGAACCCAGACTTCCCCCATGACATTCAGTTCACAGCACTACCAACAGCATTTCCAGGCAATCATATCGGGCCGAATAGCCCCTTGTGTTGTTTACCAGACAATGCTCCTGCAAGCATACAGGGAACCAGGCATGCTCAAATCGGAAAATCTCTTTCAGATTTCCACCTCAGCAATAAACTGCAGCTGGGGCTGCTTCCAACTAGTATCCATCGGCTCGATGTTCATAGTGGCAACTCGAACCGTGACATGACCAACCATGATAAGAGCAAAGAGAGCTTATCATGCTTGCTTACCATGGGAAAATCTAACAAGAGTTTGGAGAAATCTGAGAATAATAATAATAATAATAATAATAATAATAATGTTAAGAGTCACCAGTTTTTTCTTTTCGGTCAGCCTATTCTCACCGAGCAACAAATCTCTCGAACCGGAAAAGACTCTCCGGACGAGACTAAGATCAACGAGAAGTGCTTCTTCGGCGAAGCTAAATTTGCAGTTTCGCAGCACATTCCACCAGGAAAAGCTTCTAATGCTGCCGAGTTTTCGTGGCATATCGGCTTGGAAACTGGCCATTGTAAGGTTTTCTTGGAATCAGAAGATGTAGGAAGGACCTTAGACCTATCAAGCCTAGGTTCTTATGAAGAGCTCTATAGAAAATTGGCCACCATGTTTGATATGGAAAGATCTGAGATCCTAAACCATGTCCTTTACCGCGACGAAACAAGTGCTGTTAAGAAAATTGGAGAAGAACCCTTCAGTGAATTCATGAAGACAGCAAAAAGATTGACAATTCTTATGGATTCAGGCAGCAAAAATATTAAAAGGGCATGGATTACAGGGACTCACAGTGGTGAACATGGAATTGATGCACCAAACAAAACTGGTCCTCTTAGTATATTTGTTTAA 2109 0.4486 MIQMPQVNSKVFYFPQGHAEHAQTAIDVLSTPSLRVPPLIPCRVASVRFMADPETDEVFAKIKLVPVRSSELDQNDSVLEGEVVVENQEKPASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSAEPPVQTVVAKDVHGELWKFRHIYRGTPRRHLLTTGWSTFVNHKKLVAGDSVVFLRAENGDLCVGIRRAKRVIGIGIGGNGGGCEGSSLWSSASSGNGNGNGGPYGALSMFLREENNKLLRNNSNNGRCSPSSSSSRVRAEDVVEAVSMAARNQPFEVVYSPRANTPEFCIKASSVSSAMRIQWCPGMRFKMPFETEDSSRISWFMGTIASVQVVDPIRWPNSPWRLLQVTWDEPDLLQNVKRVSPWLVELVSNMPVINLSPFSPPPRKKLRFPQNPDFPHDIQFTALPTAFPGNHIGPNSPLCCLPDNAPASIQGTRHAQIGKSLSDFHLSNKLQLGLLPTSIHRLDVHSGNSNRDMTNHDKSKESLSCLLTMGKSNKSLEKSENNNNNNNNNNNVKSHQFFLFGQPILTEQQISRTGKDSPDETKINEKCFFGEAKFAVSQHIPPGKASNAAEFSWHIGLETGHCKVFLESEDVGRTLDLSSLGSYEELYRKLATMFDMERSEILNHVLYRDETSAVKKIGEEPFSEFMKTAKRLTILMDSGSKNIKRAWITGTHSGEHGIDAPNKTGPLSIFV 702
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271891g00035 702 FunFam Auxin response factor 310 383 - -
Stsc271891g00035 702 Gene3D - 589 675 - -
Stsc271891g00035 702 CDD B3_DNA 93 194 IPR003340 GO:0003677
Stsc271891g00035 702 Gene3D - 92 196 IPR015300 -
Stsc271891g00035 702 SUPERFAMILY DNA-binding pseudobarrel domain 79 198 IPR015300 -
Stsc271891g00035 702 Pfam B3 DNA binding domain 94 195 IPR003340 GO:0003677
Stsc271891g00035 702 FunFam Auxin response factor 92 196 - -
Stsc271891g00035 702 ProSiteProfiles B3 DNA-binding domain profile. 94 196 IPR003340 GO:0003677
Stsc271891g00035 702 Pfam Auxin response factor 272 355 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Stsc271891g00035 702 SMART B3_2 94 196 IPR003340 GO:0003677
Stsc271891g00035 702 Gene3D - 310 382 - -
Stsc271891g00035 702 ProSiteProfiles PB1 domain profile. 590 670 IPR000270 GO:0005515
Stsc271891g00035 702 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 1 669 IPR044835 GO:0003677|GO:0006355|GO:0009725
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271891g00035 Stsc-Chr271891 210583 213371 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271891g00035 1 676 B3 DNA Binding Superfamily AT2G28350 54.725 0.0 684
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Stsc271891g00035 B3 2.9e-21 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271891g00035 - - gmx:100814686 920.228