Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271891g00031 ATGAACAAGTTGTTGATGGAAGAAAATGATCGGTTGCAGAAACAAGTTTCACAGCTTGTGTGTGAGAATGGTTACATGAGGCAGCAATTGCAAACTGCATCAGCTGCAACTACTGATGCTAGTTGTGATTCAGTGGTTACTACTCCTCAGCATTCCATGAGAGATGCTAACAACCCTGCTGGACTCCTATCAATTGCAGAGGAGACTCTGACAGAGTTCCTATCCAAGGCTACGGGGACTGCTGTCGATTGGGTCCAGATGCCTGGGATGAAGCCTGGTCCGGATTCGGTTGGGATCTTTGCCATTTCACAAAGTTGCAGTGGAGTGGCAGCTCGAGCCTGCGGTCTTGTTAGTTTAGAACCTACAAAGATAGCGGAGATCCTGAAAGATCGTCCATCTTGGTTTCGGGAGTGTCGGAGCCTAGAGGTTTTCTCAATGTTCCCTGCTGGTAATGGAGGGACCATTGAACTTGTTTACACACAGACATATGCTCCAACGACACTTGCTCCTGCCCGGGATTTCTGGACTCTTAGATACACTACAAGTCTGGAGAATGGCAGTCTTGTGGTTTGTGAGAGGTCGCTGTCTGGTTCTGGGAGTGGCCCTAATGCAGCTGCTGCTGCTCAGTTTGTAAGGGCTGAAATGCTTCCCAGCGGCTATTTGATTCGACCGTGTGAAGGTGGAGGATCAATTATTCACATTGTAGACCACCTAAATCTTGAGGCCTGGAGTGTGCCAGAAGTGCTGCGACCACTTTACGAATCATCAAAAGTGGTGGCTCAAAAAATGACAATTGCAGCACTTCGATATATAAGGCAAATAGCCCAGGAAACAAGTGGTGAAGTGGTATATGGATTGGGTCGGCAGCCTGCAGTCCTTCGAACATTTAGCCAAAGATTGAGCAGGGGCTTCAATGATGCTGTGAATGGATTCAATGATGATGGATGGACTGTACTAAATTGTGATGGTGCCGAGGATGTAATTATTGCAGTTAATTCAACCAAGAATTTGAGCGGAACTTCTAATCCTGCAAGTTCCCTAACATTCCTTGGAGGAATTCTGTGTGCAAAAGCTTCTATGTTGCTCCAAAATGTTCCTCCTGCGGTTTTGGTTCGCTTTCTCAGGGAGCACCGCTCAGAGTGGGCTGATTTCAATGTTGATGCTTATGCTGCTGCATCACTGAAAGCTGGCACCTATGCTTATCCAGGAATGAGGCCAACAAGATTCACTGGCAGTCAAATAATCATGCCTCTTGGCCATACAATCGAACATGAAGAGATGTTAGAAGTAATTAGGCTTGATGGCTATTTGCTTCTAGGGACATTCATCTCTTACAGTGGAATTGATGAGAATGCCGTGGGGGCTTGTTCTGAGCTTATATTTGCTCCGATTGATGAAATGTTCCCTGATGATGCTCCATTGGTACCGTCTGGATTCCGCATCATCCCATTGGATTCAAAACCAGGCGATAAAAAGGATGCAACGACTTCTAATAGGACCCTTGACTTGACATCTGGTCTTGAAGTTGGCCCTGCAACTACTCAGGCCACAGGAGATGCATCATCAAGTCAAAACAACCGATCAGTGTTGACTATCGCATTCCAGTTTCCTTTTGACAGCAATTTGCAAGATAATGTTGCTGTCATGGCACGACAATATGTCCGTAGCGTGATTTCTTCTGTCCAAAGGGTTGCAATGGCTATATCTCCCGGAATGAACCCTACTGTTGGGTCTAAACTGTCTCCTGGTTCTCCAGAAGCCCTTACACTAGCTCACTGGATCTGCCAGAGTTATAATTACTATTTAGGGTCTGACTTGCTGAGATCAGATTCGCTTGCCGGTGACTCGATGCTGAAGAATTTGTGGCATCATCAGGATGCCATTTTGTGCTGTTCACTGAAGTCGCTGCCAGTGTTCATCTTCGCGAATCAAGCCGGCCTCGACATGTTGGAAACAACCCTGGTGGCTTTACAGGACATCACATTGGACAAAATATTCGACGAGTCTGGCCGCAAGGCATTGTGTGCCGACTTTGCCAAGTTAATGCAGCAGGGTTTTGCTTATCTACCAGCCGGGATATGCATGTCAACAATGGGGAGGCATGTTTCATATGAACAAGCCATTGCATGGAAAGTGCTTGCTGCAGAAGACAACACTGTTCATTGCTTAGCTTTCTCTTTTATAAATTGGTCATTTGTATGA 2202 0.4619 MNKLLMEENDRLQKQVSQLVCENGYMRQQLQTASAATTDASCDSVVTTPQHSMRDANNPAGLLSIAEETLTEFLSKATGTAVDWVQMPGMKPGPDSVGIFAISQSCSGVAARACGLVSLEPTKIAEILKDRPSWFRECRSLEVFSMFPAGNGGTIELVYTQTYAPTTLAPARDFWTLRYTTSLENGSLVVCERSLSGSGSGPNAAAAAQFVRAEMLPSGYLIRPCEGGGSIIHIVDHLNLEAWSVPEVLRPLYESSKVVAQKMTIAALRYIRQIAQETSGEVVYGLGRQPAVLRTFSQRLSRGFNDAVNGFNDDGWTVLNCDGAEDVIIAVNSTKNLSGTSNPASSLTFLGGILCAKASMLLQNVPPAVLVRFLREHRSEWADFNVDAYAAASLKAGTYAYPGMRPTRFTGSQIIMPLGHTIEHEEMLEVIRLDGYLLLGTFISYSGIDENAVGACSELIFAPIDEMFPDDAPLVPSGFRIIPLDSKPGDKKDATTSNRTLDLTSGLEVGPATTQATGDASSSQNNRSVLTIAFQFPFDSNLQDNVAVMARQYVRSVISSVQRVAMAISPGMNPTVGSKLSPGSPEALTLAHWICQSYNYYLGSDLLRSDSLAGDSMLKNLWHHQDAILCCSLKSLPVFIFANQAGLDMLETTLVALQDITLDKIFDESGRKALCADFAKLMQQGFAYLPAGICMSTMGRHVSYEQAIAWKVLAAEDNTVHCLAFSFINWSFV 733
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271891g00031 733 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 1 733 IPR044830 GO:0003700
Stsc271891g00031 733 Pfam START domain 65 272 IPR002913 GO:0008289
Stsc271891g00031 733 MobiDBLite consensus disorder prediction 498 523 - -
Stsc271891g00031 733 Gene3D - 99 281 IPR023393 -
Stsc271891g00031 733 ProSiteProfiles START domain profile. 55 283 IPR002913 GO:0008289
Stsc271891g00031 733 MobiDBLite consensus disorder prediction 486 523 - -
Stsc271891g00031 733 SMART START_1 64 274 IPR002913 GO:0008289
Stsc271891g00031 733 Pfam MEKHLA domain 589 732 IPR013978 -
Stsc271891g00031 733 SUPERFAMILY Bet v1-like 64 276 - -
Stsc271891g00031 733 CDD START_ArGLABRA2_like 59 275 - -
Stsc271891g00031 733 Coils Coil 2 22 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271891g00031 Stsc-Chr271891 182025 186221 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271891g00031 1 733 Homeobox Transcription Factor Family AT5G60690 81.041 0.0 1246
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271891g00031 K09338 - gmx:100804870 1339.71