Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271891g00026 ATGGGAGAAGATGATTTTGGTGTGGATGAGAAACGGTTGGTGGTAGGGCGAAGGGGTGTAACTGCCAGTCGCAGGGTCAGAGGGAGTGACTGCCTCATTTCAGCTTCTTCCTCTGTTGGAGAAAACCCTAATCTCCATTTTCTCCTCCTTCGCCATCAAAACACATTCAGAATGCCGCCAAAGTTCGATCCATCTCAAGTAGTGGACGTCTACGTCCGTGTCACCGGAGGAGAAGTCGGCGCCGCCAGTTCCCTCGCCCCTAAGATCGGTCCACTCGGTCTCTCTCCAAAGAAGATCGGAGAAGACATCGCCAAAGAAACCGCCAAGGATTGGAAGGGCCTCCGTGTCACCGTCAAGCTCACCGTCCAGAATCGTCAGGCGAAGGTCTCCGTCGTGCCGTCCGCCGCAGCGCTAGTCATCAAGGCACTGAAGGAGCCGGAGCGTGACCGGAAGAAGACGAAGAACATCAAGCACAACGGGAATATCTCCCTTGATGACGTCATCGAGATTGCTAGGGTTATGAGGCCGAGGTCGATGGCGAAGGAGCTGAGCGGCACCGTGAAGGAGATCTTAGGTACATGTGTCTCCGTCGGGTGCACGGTGGACGGCAAGGATCCTAAGGATTTGCAGGAGGAGATTACTGATGGTGACGTTGAAATCCCTCAGGATTGA 672 0.5461 MGEDDFGVDEKRLVVGRRGVTASRRVRGSDCLISASSSVGENPNLHFLLLRHQNTFRMPPKFDPSQVVDVYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPRSMAKELSGTVKEILGTCVSVGCTVDGKDPKDLQEEITDGDVEIPQD 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271891g00026 223 CDD Ribosomal_L11 70 201 IPR000911 GO:0003735|GO:0005840|GO:0006412
Stsc271891g00026 223 SUPERFAMILY Ribosomal L11/L12e N-terminal domain 54 144 IPR036796 -
Stsc271891g00026 223 PANTHER 60S RIBOSOMAL PROTEIN L12 58 208 IPR000911 GO:0003735|GO:0005840|GO:0006412
Stsc271891g00026 223 Hamap 50S ribosomal protein L11 [rplK]. 66 203 IPR000911 GO:0003735|GO:0005840|GO:0006412
Stsc271891g00026 223 SMART rl11c 70 202 IPR000911 GO:0003735|GO:0005840|GO:0006412
Stsc271891g00026 223 Pfam Ribosomal protein L11, N-terminal domain 70 126 IPR020784 -
Stsc271891g00026 223 Gene3D - 53 138 IPR036796 -
Stsc271891g00026 223 FunFam 60S ribosomal protein L12 58 138 - -
Stsc271891g00026 223 SUPERFAMILY Ribosomal protein L11, C-terminal domain 133 206 IPR036769 -
Stsc271891g00026 223 Gene3D - 139 221 IPR036769 -
Stsc271891g00026 223 ProSitePatterns Ribosomal protein L11 signature. 188 203 IPR020785 GO:0003735|GO:0005840|GO:0006412
Stsc271891g00026 223 FunFam 60S ribosomal protein L12 139 221 - -
Stsc271891g00026 223 Pfam Ribosomal protein L11, RNA binding domain 132 201 IPR020783 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271891g00026 Stsc-Chr271891 148328 151112 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271891g00026 58 223 Cytoplasmic Ribosomal Protein Gene Family AT5G60670 90.361 1.09e-108 307
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271891g00026 K02870 - twl:119995694 322.783