Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271891g00023 ATGACTAAAGATGTTGAAGTTGAAGAGCAAAGAGGAGGAGGAGGAGAGTACTCAGCAAAAGACTACCATGAACCACCACCAGCACCATTTTTTGATGCAGAGGAGCTTACAAAGTGGTCCTTCTATAGAGCACTCATAGCTGAGTTCATAGCAACACTTCTATTCCTTTACATAACTATCTTAACCATAATTGGTTATAGTCATCAGAGTGATACCACAATCAAAGGTAACACTGAGTGTGATGGTGTTGGAATCTTGGGTATTGCTTGGGCCTTTGGTGGCATGATCTTCATCCTTGTTTACTGCACCGCCGGAATTTCTGGAGGACACATCAACCCTGCCGTGACGTTCGGGTTGTTCCTTGGCCGGAAGGTGTCCTTGGTAAGGGCACTGCTATACATCGTGGCGCAGTGTGCCGGTGCCATTTGCGGCACCGGACTGGCCAAGGGCTTCCAGAAAGCTTACTTTGATAGATATGGAGGTGGTGCCAACTTTGTCCATTCTGGTTACAACAAGGGAACTGCTTTGGGTGCTGAAATTATTGGTACCTTTGTTCTTGTTTACACTGTTTTCTCTGCCACTGATCCTAAGAGAAACGCCAGAGACTCCCATGTTCCTGTGTTGGCCCCATTGCCAATTGGATTTGCTGTGTTCATGGTTCACTTGGCCACAATCCCAGTAACTGGCACTGGCATCAACCCAGCAAGAAGCTTTGGATCTGCTGTCATCTACAACAAAGACAAAATCTGGGATGACCATTGGATATTCTGGGTTGGACCAATTCTTGGAGCTGCAGCAGCTGCAATCTACCATGAACACATTATCAAAGCATCTGCCATTAAAGCCCTTGGATCCTTCAGGAGCAACAACTAA 873 0.4639 MTKDVEVEEQRGGGGEYSAKDYHEPPPAPFFDAEELTKWSFYRALIAEFIATLLFLYITILTIIGYSHQSDTTIKGNTECDGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLVRALLYIVAQCAGAICGTGLAKGFQKAYFDRYGGGANFVHSGYNKGTALGAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPVTGTGINPARSFGSAVIYNKDKIWDDHWIFWVGPILGAAAAAIYHEHIIKASAIKALGSFRSNN 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271891g00023 290 PRINTS Major intrinsic protein family signature 43 62 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc271891g00023 290 PRINTS Major intrinsic protein family signature 178 196 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc271891g00023 290 PRINTS Major intrinsic protein family signature 254 274 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc271891g00023 290 PRINTS Major intrinsic protein family signature 129 148 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc271891g00023 290 PRINTS Major intrinsic protein family signature 214 236 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc271891g00023 290 PRINTS Major intrinsic protein family signature 92 116 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc271891g00023 290 ProSitePatterns MIP family signature. 110 118 IPR022357 -
Stsc271891g00023 290 CDD MIP 43 274 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc271891g00023 290 SUPERFAMILY Aquaporin-like 35 276 IPR023271 -
Stsc271891g00023 290 MobiDBLite consensus disorder prediction 1 22 - -
Stsc271891g00023 290 NCBIfam MIP family channel protein 47 270 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc271891g00023 290 Gene3D Glycerol uptake facilitator protein. 28 290 IPR023271 -
Stsc271891g00023 290 MobiDBLite consensus disorder prediction 1 18 - -
Stsc271891g00023 290 Pfam Major intrinsic protein 35 271 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc271891g00023 290 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 8 279 IPR034294 -
Stsc271891g00023 290 FunFam Probable aquaporin PIP1-2 28 290 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271891g00023 Stsc-Chr271891 133990 136345 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271891g00023 1 288 Major Intrinsic Protein MIP AT2G37170 76.736 1.15e-164 458
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271891g00023 K09872 - gmx:100811119 493.812