Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271891g00015 ATGAATTCTCAGGAAAAGTCTCCGACTTTGGATGCTGATGCTGATGATTCTGTTGATGCTGATGCAGCAGCTTCTTGCAGAAGAACAGTTTCTCTGCCACCTCAAAAGGTTGATGATCCGATGGGGATAACCGAAGAAACCACACATGTTCCTCCAAGGAAGCGACCGAATCTTCTCCTAGAAATTCCCACAAGAACTCCAGAAGAATGCTCCCAAGATCATGTAGCAATCAAAATGCCAATGACACCAAGTCCCACTCCCACCCCAAAGAGAGTGAACTTTCTAGTGTCTTCTCGCTCGGTCGATGCTCCTATGCATAATTCTCCGGGGCCTTCATCAGCTTCGAAAGGCAGATCATCCATAAGAAGCATTCTACCAAAATTGAGCTTCAGGTATCGGCCGCCAACAGATATTGAAAAGGGTACTACTGCAGCTCAAGAAGGTTCCTCTTCAGGTCATCGCGAAAAGCCATCGATCTCAAGATCATTGTCCCTTAGTAAGATATTTACTCCTAGGATGAAAAGAACATCTTCATTGCCAGTAGAAGATTTGGCACATTCAAATACTGAATCTGCTCATGGTGGAAGTGTTGGTGGTCCTCAAAATAAAGGAGAGCCGCAGCGCAAGATAGCTCGCTCGCTTTCAGTACCTGTCAATAACAAGGATAAAGGCATAAGGAGGATGGATTCCTTTTACCGGATTGTTCCTACCACCCCTCGAGTTAAGGAAGGAAATGCATTGTCGTCCACATCCCCGACAAAGAACTCCGAAATCAACGACGACGATGATGATGACGGCGAAGATATACCTGAAGAAGAAGCTGTGTGTAGGATTTGTTTGGTTGAGTTATGTGAAGGAGGTGAGACCTTCAAGTTGGAATGTAGCTGCAAAGGAGAACTTGCTCTGGCTCACCAAGAATGTGCAATTAAATGGTTTAGTATCAAGGGTAACAGAACCTGTGATGTATGCAAGGAGGATGTTCGGAACCTACCGGTTACTTTATTACGGATCCAAAGTGTTCGAGCCCGGAATCCAGGAGCAAGTAGGACTCAGCTGGAAGATGCAAATGGATACAGGGTTTGGCAGGAAGTTCCAGTGCTCGTCATTGTCAGCATGCTTGCCTATTTCTGTTTTCTTGAGCAGTTATTGGTCACGAAAATGGGAACCGGTGCAATCGCCATATCTCTTCCATTTTCCTGTGTGCTTGGCCTACTTTCCTCCATGACATCATCAACCATGGTTAAGAGCAGGTTCATCTGGATTTATGCATCTGCCCAGTTTGCTCTTGTGGTTCTCTTTGCACATATATTTTACTCATTGGTTCATGTTCAAGCAGTTCTGTCAATCCTTCTGGCAACATTCGCCGGTTTCGGTGTGGTTATGAGTGGAAGTTCTATTCTCGTTGAGTTCTTCAGATGGAGAAGAAGATGGCAGCAGCAGCAGCAGCAGCAAGATTCACAACTGATGACACAACCTCGGCCTGCAAACACGCCGCGTCCGGTGGTGCCTCCCAACCACAATCAAACTGCAGAAGCAGAACAAGATCAACAGAACTCAAATCAAAGCTGA 1569 0.4583 MNSQEKSPTLDADADDSVDADAAASCRRTVSLPPQKVDDPMGITEETTHVPPRKRPNLLLEIPTRTPEECSQDHVAIKMPMTPSPTPTPKRVNFLVSSRSVDAPMHNSPGPSSASKGRSSIRSILPKLSFRYRPPTDIEKGTTAAQEGSSSGHREKPSISRSLSLSKIFTPRMKRTSSLPVEDLAHSNTESAHGGSVGGPQNKGEPQRKIARSLSVPVNNKDKGIRRMDSFYRIVPTTPRVKEGNALSSTSPTKNSEINDDDDDDGEDIPEEEAVCRICLVELCEGGETFKLECSCKGELALAHQECAIKWFSIKGNRTCDVCKEDVRNLPVTLLRIQSVRARNPGASRTQLEDANGYRVWQEVPVLVIVSMLAYFCFLEQLLVTKMGTGAIAISLPFSCVLGLLSSMTSSTMVKSRFIWIYASAQFALVVLFAHIFYSLVHVQAVLSILLATFAGFGVVMSGSSILVEFFRWRRRWQQQQQQQDSQLMTQPRPANTPRPVVPPNHNQTAEAEQDQQNSNQS 522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271891g00015 522 MobiDBLite consensus disorder prediction 502 522 - -
Stsc271891g00015 522 SUPERFAMILY RING/U-box 272 326 - -
Stsc271891g00015 522 MobiDBLite consensus disorder prediction 78 218 - -
Stsc271891g00015 522 MobiDBLite consensus disorder prediction 142 173 - -
Stsc271891g00015 522 SMART ringv_2 275 324 IPR011016 GO:0008270
Stsc271891g00015 522 PANTHER OS02G0165000 PROTEIN 39 490 - -
Stsc271891g00015 522 MobiDBLite consensus disorder prediction 482 522 - -
Stsc271891g00015 522 MobiDBLite consensus disorder prediction 88 122 - -
Stsc271891g00015 522 MobiDBLite consensus disorder prediction 242 267 - -
Stsc271891g00015 522 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 261 331 IPR013083 -
Stsc271891g00015 522 ProSiteProfiles Zinc finger RING-CH-type profile. 268 330 IPR011016 GO:0008270
Stsc271891g00015 522 Pfam RING-variant domain 276 323 IPR011016 GO:0008270
Stsc271891g00015 522 CDD RING_CH-C4HC3_MARCH 276 324 - -
Stsc271891g00015 522 MobiDBLite consensus disorder prediction 1 57 - -
Stsc271891g00015 522 MobiDBLite consensus disorder prediction 181 196 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271891g00015 Stsc-Chr271891 96529 99947 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271891g00015 262 330 C3H Transcription Factor Family AT2G37950 47.143 3.06e-14 70.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271891g00015 - - gmx:100788108 715.301