Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271891g00013 ATGCTCAGTAAGACTCTTTCTTTTGCCACTGCAATGGGCTGCTGTAATTGCTTCGGCTGGATAGGGGGACAAAGCCGACCGAGGGCTAAGCCCCGCACTGTCAACCGTAATCAGTCCCAGGAGCCGTTGTTGGACGATGACGTGGATGATGACATGGATGATGATGATGATGATGATGAGCAGATGTATGGTGACGACGATGTTGCTAACTCCAGTAGTGGAGATGATAGTGATGGGCTTATTCGCCCCAAGCGATCTGAGGATATTTTGAACTTTAGAGCAGATAATGACTTGGTTTGTAGGAAGTTTCCTGTTAAGGAGACTAACAAAGTTGTTCGCACAGAGGATGACAATGGGAACAAGATGGTTAATGAGTATATACGTGAATATAAGATTGGTTCTGGTAGCTATGGGAAAGTGGCTCTTTATCGAAACTCTCTCGACGGAAAGCACTATGCAATTAAGTCCTTTCACAAGTCTCATTTACTGAAGCTTCGAGTTGCACCCTCTGAGACAGCCATGTCTGATGTTCTACGCGAGGTACAAATTATGAAAATGCTAGGGCATCCTAATATAGTCAATCTTATTGAGGTGATTGATGATCCAGAATCAGATCACTTCTACATGGTACTTGAATATGTGGAAGGCAAATGGGTTTGTGAGGGTACTGGCCGTGCTTGTGCCTTAGTTGAAGAGACTGCTAGGAGATACTTACGAGATATAGTTTCGGGATTGTCATATCTCCATGCTCATAACATAGTACACGGGGATATTAAACCTGATAATCTGCTGATTACACGCCATGGAACGGTAAAAATAGGGGATTTCAGTGTCAGCCAGGCTGTTGAGGATGATAATGATGAGCTTCGCCGATCACCTGGCACTCCCGTTTTCACAGCACCAGAATGTATTTTAGGCCTGACCTATCATGGCAAAGCAGCAGACACTTGGGCAGTAGGAGTTACTTTATACTGTATGATATTGGGTGAATACCCCTTTCTTGGGGACACACTTCAAGATACATATGACAGAATAGTCAATAATCAAATAATACTCCCAAATGATCTGAACCCACATGTAAAGAACCTAATAGAAGGACTACTAATGAAAGACCCAAAACTAAGGATGACTCTGGGTGATGTTGCGGCACATAGCTGGGTTGTTGGAGATGATGGGCCGATTCCTGAGTTTCTGTGTTGGTGCAGAAGGAAGCGCTCTGTGCATGAAAGCAACGAGAACAATACTACTGACTAA 1254 0.4394 MLSKTLSFATAMGCCNCFGWIGGQSRPRAKPRTVNRNQSQEPLLDDDVDDDMDDDDDDDEQMYGDDDVANSSSGDDSDGLIRPKRSEDILNFRADNDLVCRKFPVKETNKVVRTEDDNGNKMVNEYIREYKIGSGSYGKVALYRNSLDGKHYAIKSFHKSHLLKLRVAPSETAMSDVLREVQIMKMLGHPNIVNLIEVIDDPESDHFYMVLEYVEGKWVCEGTGRACALVEETARRYLRDIVSGLSYLHAHNIVHGDIKPDNLLITRHGTVKIGDFSVSQAVEDDNDELRRSPGTPVFTAPECILGLTYHGKAADTWAVGVTLYCMILGEYPFLGDTLQDTYDRIVNNQIILPNDLNPHVKNLIEGLLMKDPKLRMTLGDVAAHSWVVGDDGPIPEFLCWCRRKRSVHESNENNTTD 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271891g00013 417 FunFam Serine/threonine-protein kinase GRIK2 116 417 - -
Stsc271891g00013 417 ProSitePatterns Protein kinases ATP-binding region signature. 132 155 IPR017441 GO:0005524
Stsc271891g00013 417 FunFam Serine/threonine-protein kinase Ssp1 120 222 - -
Stsc271891g00013 417 Gene3D Phosphorylase Kinase; domain 1 120 223 - -
Stsc271891g00013 417 MobiDBLite consensus disorder prediction 44 65 - -
Stsc271891g00013 417 SUPERFAMILY Protein kinase-like (PK-like) 123 401 IPR011009 -
Stsc271891g00013 417 ProSiteProfiles Protein kinase domain profile. 126 387 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc271891g00013 417 MobiDBLite consensus disorder prediction 26 82 - -
Stsc271891g00013 417 ProSitePatterns Serine/Threonine protein kinases active-site signature. 253 265 IPR008271 GO:0004672|GO:0006468
Stsc271891g00013 417 SMART serkin_6 126 387 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc271891g00013 417 PANTHER MAP/MICROTUBULE AFFINITY-REGULATING KINASE 85 389 - -
Stsc271891g00013 417 CDD STKc_LKB1_CaMKK 132 387 - -
Stsc271891g00013 417 Gene3D Transferase(Phosphotransferase) domain 1 225 393 - -
Stsc271891g00013 417 Pfam Protein kinase domain 128 387 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271891g00013 Stsc-Chr271891 65687 70175 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271891g00013 121 394 CBL-interacting serine-threonine protein kinases AT5G35410 33.577 2.86e-45 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-LKB Stsc271891g00013 Pkinase 6.6e-60 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271891g00013 K00908 - gmx:100789178 621.698