Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271891g00009 ATGGCTTCAAACTCAAAAACCGAAAACAAGAAGAAGAACAAAGCGGTAACCAAACAAAATTCCAAAACCATCACCAAATCGAAGAACGAGAAGGATAACAAGAACAAGAACAAGAAGAGGGAGAATGAGAATGAGAATGCGAACAACAAGAAGAAGAACAACAACAACAGCAAGAAGAAGAAGCTTACACACAGCAATGGCACCTCGAAGCACCGCGGTCATGAATCTATGGTTTCTCCGAGCTCCAGCACCGACTCGCAGCTAAACCGAGAAGTAGAATCTGAAGAAGAAGATAACACTGTAGTCTCCAATGGAAGAACCGATGGTAAAAAACCTAATAAATCGAAGCGGAATCGGGAGGAGGTGGAAGACGAAGACGAAGGAGACGCGAAATCGAACGTGTTTCCGATGAATCGTATAAGAACAATCGTCAAGGCTGAAGATCCCGAAATGCGCGTTTCTCAGGAAGCGATTTTCGTCGTCAACAAAGCTGCGGAGAAGTTCCTTGAACAGTTTACGCAGGACGCTTATGTTCGGTGTGTTCAAGAGCGAAGGAAGTCTCTGAGCTACAATCACCTAGCGCATGCTGTGAGTAAGCAGCGGAGATATGAATTTCTTTCTGATTTTGTTCCTGAGAGAGTGAAAGCTGAGGATGCATTAAGAGAAAGGAATTCAGGAGGTAATGGAGGAAATTAG 696 0.4411 MASNSKTENKKKNKAVTKQNSKTITKSKNEKDNKNKNKKRENENENANNKKKNNNNSKKKKLTHSNGTSKHRGHESMVSPSSSTDSQLNREVESEEEDNTVVSNGRTDGKKPNKSKRNREEVEDEDEGDAKSNVFPMNRIRTIVKAEDPEMRVSQEAIFVVNKAAEKFLEQFTQDAYVRCVQERRKSLSYNHLAHAVSKQRRYEFLSDFVPERVKAEDALRERNSGGNGGN 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271891g00009 231 MobiDBLite consensus disorder prediction 1 133 - -
Stsc271891g00009 231 MobiDBLite consensus disorder prediction 24 48 - -
Stsc271891g00009 231 SUPERFAMILY Histone-fold 73 206 IPR009072 GO:0046982
Stsc271891g00009 231 MobiDBLite consensus disorder prediction 53 67 - -
Stsc271891g00009 231 MobiDBLite consensus disorder prediction 72 88 - -
Stsc271891g00009 231 Gene3D Histone, subunit A 86 212 IPR009072 GO:0046982
Stsc271891g00009 231 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 135 197 IPR003958 -
Stsc271891g00009 231 Coils Coil 24 60 - -
Stsc271891g00009 231 MobiDBLite consensus disorder prediction 89 132 - -
Stsc271891g00009 231 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 111 228 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271891g00009 Stsc-Chr271891 42480 49432 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271891g00009 99 194 CCAAT-HAP5 Transcription Factor Family AT1G07980 43.434 1.29e-18 78.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Stsc271891g00009 CBFD_NFYB_HMF 4.5e-16 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271891g00009 - - adu:107476944 286.96