Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271891g00002 ATGATGTCTGAAGAACCCTTTTCTTCTGTTCTTCCTCCCAATACCACCAACTTGGTTCATCTCCAACACCCAAACTCATCAAACCCTAGTAGCAATAATAACAACCCAACAATACCTAATTCAAATCCACCCATCACCAACAACAAGAAAAGAAGAAATCTTCCAGGAACACCAGAAGTGATAGCTATGTCGCCAAAGTCTCTAATGGCGACGAACCGATTCGTGTGCGAAATCTGCAACAAGGGTTTCCAGAGGGACCAGAACTTGCAGCTACATAGGAGAGGACACAACCTACCATGGAAGCTGAAGCAGAGAAACAAGGAAGAGAAAGAGCGGAAGAAGGTGTACGTGTGCCCGGAGAAGTCATGCGTGCACCACGACCCCTCCAGAGCACTGGGGGACCTCACAGGTATCAAGAAACACTTTAGCAGAAAGCATGGGGAGAAGAAATGGAAGTGTGACAAGTGCTCCAAGAAATACGCTGTTCATTCTGATTGGAAGGCCCATACCAAGATTTGTGGGACTAGGGAGTACAAATGCGACTGTGGCACCATTTTTTCGAGGAAGGACAGCTTCATAACACACAGAGCATTCTGTGATGCATTGGCTGAAGAAAGTGGAAGACTAAGAACAGTTCCAACAGGTTTGAGCAGCTTGATGATGAGTAGAAGAGATCATCATAATCATAATCATCATCATCAATTGGGAGCAAGTAGTAGAATCATACCTCATCACATTCTTCCTAGTGCTGGATTTCATCACTCAGAATTTGGTGGTGGTGGTGGTGGTGGTGGTTCATCAGTGTCATTAATGGGGAAGAATCTGCAGAGCCATGGTGATTATTATTATTCAGATCAGAAGGTGATGATGATGAAGAACAACAACAATAGCAACAACAGCAATGTTCAGATTCCAGTGTGGCTAGACCAGGTGAATAACAATCATCATAATCATGTTAGTGGCATTTCATCAAACACTAGTAGTGCATGCACCAATGGCAATATTATTATGGCTCCTGTGTTTGGGTCTACTACTAATAATGCTGCTCCACTACTACAACAACATCAACAATGGCAGCAGAATCCAGAAGCAGCATCATCATCATCATTATTCACAAATCATCATAATAACAACAACAACGTGGCTATGATGATGATGATGCCAGGACTAAAGCAAGAACAAGAAGAGATGTTCTATTTTGGTGGTGCTAGTAACAATCATCATCATCACATAATGTTGCAAAAAGCATCACAAATTGGAAGTGATGAGTTGCTCAATTTGGAAGGTAATAATAATAACATGATTATTCCTCCATTAATATTGAATAATAATTCATCATCAGCATCAATAACAAGGAGCAGGTCAAAGAATGATAATAGAGAAGATGATGAACTGGGTTTAACGAGGGATTTTCTTGGAGTTGGAGAAGATGAATCAACAATGAGTAACAACAGATCATTGATGTTGCAACAACAGCTAGCTGAGTTCACAGCCATGGATCCAATGCAGCAGCATCATCATCATCAAACTCCGTTTAGTGGACATTACTGTTAA 1554 0.4138 MMSEEPFSSVLPPNTTNLVHLQHPNSSNPSSNNNNPTIPNSNPPITNNKKRRNLPGTPEVIAMSPKSLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRNKEEKERKKVYVCPEKSCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCDKCSKKYAVHSDWKAHTKICGTREYKCDCGTIFSRKDSFITHRAFCDALAEESGRLRTVPTGLSSLMMSRRDHHNHNHHHQLGASSRIIPHHILPSAGFHHSEFGGGGGGGGSSVSLMGKNLQSHGDYYYSDQKVMMMKNNNNSNNSNVQIPVWLDQVNNNHHNHVSGISSNTSSACTNGNIIMAPVFGSTTNNAAPLLQQHQQWQQNPEAASSSSLFTNHHNNNNNVAMMMMMPGLKQEQEEMFYFGGASNNHHHHIMLQKASQIGSDELLNLEGNNNNMIIPPLILNNNSSSASITRSRSKNDNREDDELGLTRDFLGVGEDESTMSNNRSLMLQQQLAEFTAMDPMQQHHHHQTPFSGHYC 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271891g00002 517 MobiDBLite consensus disorder prediction 443 464 - -
Stsc271891g00002 517 Gene3D Classic Zinc Finger 58 126 - -
Stsc271891g00002 517 FunFam protein indeterminate-domain 5, chloroplastic-like 129 208 - -
Stsc271891g00002 517 ProSiteProfiles Zinc finger C2H2 type domain profile. 74 96 IPR013087 -
Stsc271891g00002 517 Pfam Zinc finger, C2H2 type 74 96 IPR013087 -
Stsc271891g00002 517 SUPERFAMILY beta-beta-alpha zinc fingers 73 171 IPR036236 -
Stsc271891g00002 517 SMART c2h2final6 74 96 IPR013087 -
Stsc271891g00002 517 SMART c2h2final6 151 171 IPR013087 -
Stsc271891g00002 517 SMART c2h2final6 116 146 IPR013087 -
Stsc271891g00002 517 MobiDBLite consensus disorder prediction 8 53 - -
Stsc271891g00002 517 MobiDBLite consensus disorder prediction 1 59 - -
Stsc271891g00002 517 FunFam protein indeterminate-domain 12-like 54 122 - -
Stsc271891g00002 517 ProSitePatterns Zinc finger C2H2 type domain signature. 76 96 IPR013087 -
Stsc271891g00002 517 Gene3D Classic Zinc Finger 127 206 - -
Stsc271891g00002 517 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 29 495 IPR031140 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271891g00002 Stsc-Chr271891 20669 22906 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271891g00002 30 208 IDZ Gene Family AT3G50700 79.235 1.19e-103 317
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Stsc271891g00002 zf-C2H2 0.0052 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271891g00002 K25870 - gmx:100817691 369.007