LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc271890g00023	ATGTCCCAGGGATCTCCCCCTCCTCCGGCCACCGCCCAAGGCCGATCCTCGTCGTCGCCGGAACCCAATTCCCCAAACCACATCGCCGGCGAGGAACCCGAAACCGTCGCCGCCGATCCTCCTCCTCCTCCGCCAACCACCAGGAGCAACCGCCCCTCCCGAGCGTGTGTCCTCCGCGCCGCTTCTCGCCTCTCAGGTCTCTTCGCCGCGGAGCCTTCGCCGTCGATCCATCGGAGGAAGCCGAAGTCCGGGAAGAAAGAGCGCCGGCGGGCGGAGGAGGAGGAGGAGGAAGAAGAAGAAGATGAGGAGTCGCCGCCGCTATCGCCACAGCAGCAGCAATGCGCGAAGATCGTGACGCAGCTCGTGGAACCGCCGCTGTCTCCGTCCAGGATGCCGCGGTGGAACCTCCGCTGCATGTGGGAGTTGGCTTCGGTGCTCAATTTTTTGCATCTGTTTAGGCCACTTTTGAATATCTCACTTGAATTTTCTGCTGAAGAGTTAGAGACTGCGCTTCTTACTCCCAATGACACTTTGAGTGATATACATATGCCTTTGCTAAAGGGAATCCCTCCTATTATACGCATGGCACTTACACGTGATACTTGGATAACTGTATTATGCAGAAAATTGAGAGATTGGTGGCATTGGGTTGCTGATGGGGATCTTCCAATTGTTGCTTCACATGGGGCTGAAATTGAAGTATATAAATCGCTTGATCCAGGGGTCCGTCTTGTGATCTTAAAAGCATTATGTGACATTCGTGTTGAGCAAGAAGATATCCGGAATTATATTGACAACTCACTCAAACACGGTGTTCATCTTTCAACGTTTCGTAAAGAGCGAATTGGAGGTGATTCACATGGAATTTCTTATTGGTATGAAGATGACCCAATTGTTGGTCATAGGTTGTATCGAGAAACAAGAAAAGCTGAAGTGATTCAAATGAAGAAAGGGAAACCAAGAGGTTCGCAGGTTCTTTCTAATACATCATACCAGTGGGAAGCTGTAGCTACTAATTTTGATGAATTTCAAGATGTTTCTCTTTTCTCAAGTAAAAACAGGACAGAGGTTTCTGTGGGGAAAAAGCTAAAGATAGACATGCTCCCTGAAATTGAGAAAGTCCATAAGAGAAAGGAAAAGTTGCTTAAAAAGCAACAGAGAGAGGCTCTTCTTCTTGATAATTACATGGTTTCTGATGGTCTTGCTACCGGACGTTCACTGCGTTATAGGAAGCCTGTTACCTACACTTTTGATGATTATGATAAGTCCATAAATGAGGCAATCAAAGAAACCAAGAAGCAGCCATCCCCAGAATCCATGCCCAGGAGAGAGTTTGTGGCAAAACCAGAGGCTTTTACTAATGGCAAATGGAGTGGTCCTTCAAGTACCCCTCAAAATCTGAATTTTGGTTGGTCATCTCCAAAATCACCTTACTCTAATGATGATGAGGAAGACCATATAACTGATCCGCTCGATCGAAGCAATCGTCGAAGACAGAGACCTAAGCGGTACTCGGATAAAGAGTTCCTTGATCCTGTATCAGATAATGATGCTGACTTTGACAGTGATGATGATATTGTTGGAGAAGCTGTATATGATGAAGAGTATCTCAAGAAGCGCAAGCAGAGAAGGAAGGTTTCTAGTAGCTCTGAAGGAGATGAAGAATATCAATGGGATGAAGATAATGTTGAAGAGGAAGAGGAAGATGAAGAGGAAGAAGAAGATGATGATGACGACGACGATTCCTTGAGCATCAGTGAGGACAGTGACAAACCCCATAAGTTCAAGTCCTCGCGAGGCCGCACTAGGAGGGATTCTAAGCGCAGGCCTGTGAATGATTTTCATTCGAGTCTAAGACGCAGCAAGAGGTCAACCCGAAACCGTATAAATTACCGGCAATATGAGGCGTCCGAATCAGAACAAGAGTTTATTAAACCTGAAAAGTCTAATACATCAGCTGATCACTCAGAACCCAGTGAGAATGGGGAATATATGATGGAAAGTGAAGATTCTGATGGCAATGACGATGAAGACCAGGAAATGAAAGTAGAAGAAGAGCCTGCTACTTATCCCCCAGTTACAGTAGAAGAGAATGAACAAAATGCGCCTCCTGAAAAGTCAAGTAGTCCTGGTCAGGAGGAAGTCGAGGCCATCGGAAACGGTGGAAAGCACCATTTCCTTGATTTGAACGAGCTCGCCCCTAGCTCGGGTTTCGATGATGGTCCAAATACAATAATGAAAGATGAAGACAATGACTGCTGA	2262	0.4655	MSQGSPPPPATAQGRSSSSPEPNSPNHIAGEEPETVAADPPPPPPTTRSNRPSRACVLRAASRLSGLFAAEPSPSIHRRKPKSGKKERRRAEEEEEEEEEDEESPPLSPQQQQCAKIVTQLVEPPLSPSRMPRWNLRCMWELASVLNFLHLFRPLLNISLEFSAEELETALLTPNDTLSDIHMPLLKGIPPIIRMALTRDTWITVLCRKLRDWWHWVADGDLPIVASHGAEIEVYKSLDPGVRLVILKALCDIRVEQEDIRNYIDNSLKHGVHLSTFRKERIGGDSHGISYWYEDDPIVGHRLYRETRKAEVIQMKKGKPRGSQVLSNTSYQWEAVATNFDEFQDVSLFSSKNRTEVSVGKKLKIDMLPEIEKVHKRKEKLLKKQQREALLLDNYMVSDGLATGRSLRYRKPVTYTFDDYDKSINEAIKETKKQPSPESMPRREFVAKPEAFTNGKWSGPSSTPQNLNFGWSSPKSPYSNDDEEDHITDPLDRSNRRRQRPKRYSDKEFLDPVSDNDADFDSDDDIVGEAVYDEEYLKKRKQRRKVSSSSEGDEEYQWDEDNVEEEEEDEEEEEDDDDDDDSLSISEDSDKPHKFKSSRGRTRRDSKRRPVNDFHSSLRRSKRSTRNRINYRQYEASESEQEFIKPEKSNTSADHSEPSENGEYMMESEDSDGNDDEDQEMKVEEEPATYPPVTVEENEQNAPPEKSSSPGQEEVEAIGNGGKHHFLDLNELAPSSGFDDGPNTIMKDEDNDC	753

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Stsc271890g00023	753	Coils	Coil	556	576	-	-
	Stsc271890g00023	753	MobiDBLite	consensus disorder prediction	694	708	-	-
	Stsc271890g00023	753	MobiDBLite	consensus disorder prediction	531	552	-	-
	Stsc271890g00023	753	MobiDBLite	consensus disorder prediction	553	585	-	-
	Stsc271890g00023	753	MobiDBLite	consensus disorder prediction	452	753	-	-
	Stsc271890g00023	753	MobiDBLite	consensus disorder prediction	606	620	-	-
	Stsc271890g00023	753	Pfam	WSTF, HB1, Itc1p, MBD9 motif 1	235	265	IPR028942	-
	Stsc271890g00023	753	Coils	Coil	82	104	-	-
	Stsc271890g00023	753	PANTHER	REMODELING AND SPACING FACTOR 1	92	749	IPR028938	GO:0006355\|GO:0031213
	Stsc271890g00023	753	MobiDBLite	consensus disorder prediction	633	654	-	-
	Stsc271890g00023	753	MobiDBLite	consensus disorder prediction	1	114	-	-
	Stsc271890g00023	753	MobiDBLite	consensus disorder prediction	663	683	-	-
	Stsc271890g00023	753	MobiDBLite	consensus disorder prediction	1	25	-	-
	Stsc271890g00023	753	MobiDBLite	consensus disorder prediction	478	514	-	-
	Stsc271890g00023	753	Coils	Coil	368	388	-	-
	Stsc271890g00023	753	MobiDBLite	consensus disorder prediction	515	530	-	-
	Stsc271890g00023	753	MobiDBLite	consensus disorder prediction	455	477	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc271890g00023	Stsc-Chr271890	172374	178445	Dispersed

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TR	DDT	Stsc271890g00023		DDT	0.00014	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc271890g00023	-		-	aip:107610968	1072.38