Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271890g00019 ATGGAAGGCGGCGATCCTTCTTCTTCTTCTCTCTCCGATAACGATGAGGACGAGAACGAACTACCGGACATTCTGTCCCGAGTTCGACTCGTCGACGCTCCAGCGCTATTGTTCGTTTATTTCCACTACGCTCTTCGCTCCGAACTCAGCCAGCTCCGCCGCTTGGCGGAAACGGCGTCGTTCGGTGATCAGTCGCAGGAACTGAGCAGAGAAGTTATTCTCAAGCTTCAACGGCGGTTCCGGTTTCTTAAAATCGCTGTCAAATATCACTGTGCTGCGGAAGACGAGGTTGTCTTCCTTGCATTGGATACTCACGTGAAAAATGTGGTCTCTACATATTCTCTTGAACATAAAAGCACCAATGACCTCTTCGATTCCATCATTCACTTATTGGATGAGCTGATGTGCCTTAACGAGAATATTGCCAAGCTGTTCCAAGAACTTGTGTACTGCATTGGCGTCTTGCAAACTTCCATCTACCAACATATGCTGAAAGAAGAAGAGCAGGTTTTTCCACTGGTGATACAAAAATTACCTACTGAAGAACAGGCTTCACTTGTGTGGCAATTCATATGTAGTGTTCCTATAATATTGCTGGAGGAACTTTTGCCCTGGATGGTGTCCTTCCTTTCCGAAGACAAACAAGCAGAAGTCACTCAGTGTATAAATGAAATTGCGGCCATGGAAAAAGCACTCCAAGAGGTTTTGGTTTCTTGGATTGGAAGCAACAAACAAATATTCACTGACGTCTCTTTCAAGGATGAAGTTCAAGGTGGTGTTCAATCCTTAGATATAACAAGATCATTTCCGTTGGGTTCTTCTAATAGGAAGAACTACCAAGAACTTTCAAGTCAGATGGAAGTGAATGGCCCAAAAGACAAAGATGGGACCACCCAGATTAACGTTCTTCATCTTTGGCATGATGCCATCATAAAGGATTTGGAAGAAATTCTGAAAGAACTTTGTTTAATAAAAAACTGCAGCAGCTTTCAGAATTTAGAATCACTGCTTATCCAACTGAAATTCTTTGCAGATGTCATCACCTTCTACAGCAATGCTCAGAAAAAATTAGTGCTGAACAAACTTGCTGATGACTGCTTGTCAAAATCTATTGAAAAATTTTGTGATGTAAGTCATATTGAAGATTTACAGCAGTTGTTATTCTATAGATCAGAAAGTGGAATGCCTTTGAGCGACTTTGTAGAGAAGCTTTGTCAAAGACTTGAATCATTCGTATCAATGCTCAGAAAACAATTTGCTTTTCAAGAAAATGAGGTATTTCCTGCCATTAGAAAGAACTGTAGCAATGGGATGCAAGAGGGACTTCTGAGCTTGAGCCTGTATATGATGCCACTTGGGTTAGTAAAGGGTGCTATAACTTGGTTTTCAGTTCACTTGCCTGAAAAGGAATCCAGATCCATTCTCTATTTCATAAAGAAAGGAAATCATGTTGCCTGTAAAGGTTTTGCATCACTCTTACAGGAGTGGTTCCGCAATGGGTATTCAGGTAAAACTTCTATTGAAAAATTCCGACAGGACTTGCACCATATGTTCAAAAGCAAATACTCTTTCTTACCTGAGCAAGTTAAGAAAGCACCTGGGTTTTCTTTAAATTCTGACAAGCTGCCTCATAAGGTCTCTAGCAAGAATTGTCTATCCTATCCCTCACCTTCGGGATCGAACAAATATGAGACACCATATTCCACAGGAATTAATCTGCATATACTTTTTCCGGCTACAGTCGTTAAGTTGCATCTGAATCCTGGATGCCATGCAGCAAATAGTTCTTCTGTTTCCTTTCTTGAAGATCCAAAACCAATTGACATAATATTTTTCTTTCACAAGGCTATCAAGAAAGATTTGGATTACCTAGTTCTTGGCTCAGCTCAGTTAGAAGACAATCCTAAGATGCTTATGGATTTCCACAAGCGGTTCCACATCATATATTTTCTTTATCAAATCCATAGTGATGCAGAGGATGAAATAGTCTTCCCAGCTTTGGAGGCAAGTGGTAAACTCAAAAACATCAGCCATGCCTACACCTTTGATCACGAAGTTGAAGTTAAACACTTCAATAAAATATCCGGCATCCTTCATAAGATGTCTGAATTAGATCTTTCGGTTTCTACATCCTTGGTAAGGTATCAGCATTTATGCAGGAAGCTGCAACAAATTTGCAAATCAATGCATAAATCACTTTCATGCCATATTGACCGAGAGGAAGTAGAAATTTGGCCTTTAATTAGAGAATTCTTCTCAAATAAGGAGCAAGGGAAGATCATAGGATGCATGCTTGGAAGAATAGGAGCACAGATATTGCAAGATATAATACCTTGGCTAATGGCATCGTTAACACAGAAAGAACAACATGTTTTAATGTTCTTATGGTCCATGGCTACTAAAAATACAATGTTTAATGAGTGGTTAAGTGAATGGTGGGATGGGTACAGTATATCTAAGCCAGCAGAGGGAACAAATAGTGCCCCTAAACAGACTGTTGAGCCACTGGAGATTATATCCAAATACTTTTCTGAAGAAGTTCTTGATGAATTACAAGAAGAACCCTCTTCCAACGCAAGTACTGATTTTCTTCAGAACGATCATATTGGTGATAATGTCCTGCTGTTTAACAACAACTTTGATGGCACAGTTGAGATTCAAGCTGCAGCGCAGAATAAAAATGAAATTTCAAAATTCACAAATCATTTTCATGATAACATCAAACATGGTCAGAATCAAGAAAAGGAAGGAATCACAAATACAATCAACAATGAAGCTCAATCATTTCAATTTCATCACAAGTCCAGGCATTATGACCGACTTCTGAAACTTACTCAAGATGATCTGGAGAAGGCAATAAGAAGGGTGACTCGCGATTCCTACTTAGATCCTCAAGAAAAGGCATACATAATACAGAACCTGCTAATAAGCCGTTGGATTATTAGACAGAAGATATCCTTTACAGAAGTTGATGTCAAAAATGACGAGCAGGAAATTCCAGGGAAGCATCCATCCTATAGGGATCCTCTCAAACTAATTTATGGTTGCAAACATTACAAGAGAAACTGTAAGATTTTTACCCCATGTTGCAACCAACTTCATACTTGCATACATTGCCACAATGAGGTATCAGATCATCCAATTGACAGGGAAATTTACCACTGTCCCTATTGTAACCTGTGCCGAGTTGGAAAGGGCTTGGGTGCAACTTACTTTCATTGCATGAATTGCAATGCATGTATGTCACGTAGTCTTTTAGTACACACATGCAGGGAAAAACATTTAGAAGATAACTGTCCAATCTGCCATGAATATATCTTCACATCCCTGGCTCCGGTAAAAGCCCTTCCATGTGGTCATGTGATGCACTCGGCATGTTTTGAGGAATATACTTGCTTTAACTACACTTGCCCTATATGTAGCAAGTCAATTGTAGACATGCAGGACTATTTTAAGAAGCTAGATTCTCTATTGGCCGAAGAGAAAATGTCTGATGAGCTTTCCAATCGAACTCAGGTTATATTATGCAATGACTGCGAAAAGAAAGGAGAAGCCCCCTTCCACTGCCGTTACCACAAATGCCCTTATTGTGGTTCCTACAACACCAGAGTGCTATGA 3618 0.3986 MEGGDPSSSSLSDNDEDENELPDILSRVRLVDAPALLFVYFHYALRSELSQLRRLAETASFGDQSQELSREVILKLQRRFRFLKIAVKYHCAAEDEVVFLALDTHVKNVVSTYSLEHKSTNDLFDSIIHLLDELMCLNENIAKLFQELVYCIGVLQTSIYQHMLKEEEQVFPLVIQKLPTEEQASLVWQFICSVPIILLEELLPWMVSFLSEDKQAEVTQCINEIAAMEKALQEVLVSWIGSNKQIFTDVSFKDEVQGGVQSLDITRSFPLGSSNRKNYQELSSQMEVNGPKDKDGTTQINVLHLWHDAIIKDLEEILKELCLIKNCSSFQNLESLLIQLKFFADVITFYSNAQKKLVLNKLADDCLSKSIEKFCDVSHIEDLQQLLFYRSESGMPLSDFVEKLCQRLESFVSMLRKQFAFQENEVFPAIRKNCSNGMQEGLLSLSLYMMPLGLVKGAITWFSVHLPEKESRSILYFIKKGNHVACKGFASLLQEWFRNGYSGKTSIEKFRQDLHHMFKSKYSFLPEQVKKAPGFSLNSDKLPHKVSSKNCLSYPSPSGSNKYETPYSTGINLHILFPATVVKLHLNPGCHAANSSSVSFLEDPKPIDIIFFFHKAIKKDLDYLVLGSAQLEDNPKMLMDFHKRFHIIYFLYQIHSDAEDEIVFPALEASGKLKNISHAYTFDHEVEVKHFNKISGILHKMSELDLSVSTSLVRYQHLCRKLQQICKSMHKSLSCHIDREEVEIWPLIREFFSNKEQGKIIGCMLGRIGAQILQDIIPWLMASLTQKEQHVLMFLWSMATKNTMFNEWLSEWWDGYSISKPAEGTNSAPKQTVEPLEIISKYFSEEVLDELQEEPSSNASTDFLQNDHIGDNVLLFNNNFDGTVEIQAAAQNKNEISKFTNHFHDNIKHGQNQEKEGITNTINNEAQSFQFHHKSRHYDRLLKLTQDDLEKAIRRVTRDSYLDPQEKAYIIQNLLISRWIIRQKISFTEVDVKNDEQEIPGKHPSYRDPLKLIYGCKHYKRNCKIFTPCCNQLHTCIHCHNEVSDHPIDREIYHCPYCNLCRVGKGLGATYFHCMNCNACMSRSLLVHTCREKHLEDNCPICHEYIFTSLAPVKALPCGHVMHSACFEEYTCFNYTCPICSKSIVDMQDYFKKLDSLLAEEKMSDELSNRTQVILCNDCEKKGEAPFHCRYHKCPYCGSYNTRVL 1205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271890g00019 1205 Pfam Hemerythrin HHE cation binding domain 42 174 IPR012312 -
Stsc271890g00019 1205 Pfam Zinc-ribbon 1145 1203 IPR039512 -
Stsc271890g00019 1205 ProSiteProfiles Zinc finger RING-type profile. 1099 1141 IPR001841 -
Stsc271890g00019 1205 Gene3D nmb1532 protein domain like 35 192 - -
Stsc271890g00019 1205 Gene3D nmb1532 protein domain like 602 765 - -
Stsc271890g00019 1205 SMART ring_2 1099 1140 IPR001841 -
Stsc271890g00019 1205 CDD Hr-like 37 172 - -
Stsc271890g00019 1205 ProSiteProfiles Zinc finger CTCHY-type profile. 1031 1098 IPR017921 -
Stsc271890g00019 1205 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1092 1143 IPR013083 -
Stsc271890g00019 1205 CDD Hr-like 608 746 - -
Stsc271890g00019 1205 Gene3D - 1169 1205 - -
Stsc271890g00019 1205 CDD RING-H2_Pirh2-like 1098 1141 - -
Stsc271890g00019 1205 ProSiteProfiles Zinc finger CHY-type profile. 1009 1079 IPR008913 GO:0008270
Stsc271890g00019 1205 FunFam Zinc finger protein-related isoform 1 1094 1143 - -
Stsc271890g00019 1205 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 650 1050 - -
Stsc271890g00019 1205 Pfam Ring finger domain 1097 1140 IPR001841 -
Stsc271890g00019 1205 SUPERFAMILY CHY zinc finger-like 1007 1080 IPR037274 GO:0008270
Stsc271890g00019 1205 SUPERFAMILY RING/U-box 1086 1147 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271890g00019 Stsc-Chr271890 148154 157725 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271890g00019 33 841 C2H2 Transcription Factor Family AT3G18290 32.396 1.90e-125 415
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271890g00019 K16276 - gmx:100802706 1745.71