Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271890g00016 ATGGGCAACTGCAACGCTTGCGTGCGAGGAAACGACGCCGTTTCCGACGAGAACGACAACAAAAACCCCAACGGTCAGGGCCGTAAGGAGAAGAAAACCCGCGCGAACCCGTTCGCTGAAGAAGGCCTACTGCGGCACTCTCCAGCCCCGATCCGTGTACTGAAAGACGTGATCCCGGTGGGCCCGCACCGGTCCAGAATCACGGACAAGTATATTTTGGGCCGTGAACTGGGCCGAGGCGAGTTCGGGATCACGTACCTTTGCACGGACCGGGAAACAAAGCAGGAGCTAGCCTGCAAGTCAATCTCGAAGCGCAAACTTCGCACCGCCGTCGACGTGGAAGACGTCCGCCGGGAGGTGGCGATCATGAACGCGCTTCCCGACCACCCGAACGTGGTGAAGCTGAGGGCGACTTACGAGGACGACGAGAACGTTCACCTCGTGATGGAGCTCTGTGCTGGCGGCGAGCTTTTTGACCGGATCGTGGCGAGAGGACACTACAGCGAGCGCGCGGCGGCGCACGTGGCGAGGACCATTGCGGAGGTGGTGAGGATGTGCCACGTCAATGGCGTCATGCATCGGGACCTGAAGCCGGAGAATTTCTTGTTTGCGAATAAGAAGGAGAACTCGGTTCTTAAGGCCATTGACTTTGGACTCTCCGTGTTCTTCAAGCCTGGAGAAAGGTTTACAGAGATTGTTGGGAGTCCTTACTATATGGCGCCGGAGGTATTGAAGAGGAACTATGGCCCAGAGGTGGATGTGTGGAGTGCTGGTGTCATTCTTTATATTTTGTTGTGTGGAGTTCCTCCGTTTTGGGCAGAGACGGAGCAAGGGGTTGCATTAGCAATATTGAGGGGGGTGATTGACTTCAAGAGGGAGCCATGGCCGCAGATATCAGATAGCGCTAAGAGCCTTGTGAGGCAGATGTTGGAACCTGATCCTAAGAAGCGGTTGACGGCAGAGCAGGTTCTTGAACATTCCTGGCTACAGAATGCAAAGAAAGCTTCGAATGTTCCGTTGGGAGATATCGTGAGGACAAGGCTTAAGCAGTTCTCCGTGATGAATAGATTCAAAAAGAGAGCTCTTCGGGTAATTGCAGAACATTTATCTGTTGAAGAGGTAGAAATAATCAAAGATATGTTTACATTGATGGATACTGACAGAGATGGCAAAGTAACATATGAGGAACTTAAGGCCGGGTTGAAGAAGGTTGGTTCGCAATTGGCTGAGCCAGAGATAAGGATGCTGATGGAAGTGGCTGATGTTGATGGGAATGGAGTACTGGACTATGGAGAGTTTGTAGCTGTCACTATTCACTTGCAAAGAATGGAGAATGATGAGCATATCCGCAAAGCATTCACATTTTTTGACAAAGATGAGAGTGGCTATATTGAGTTAGATGAGCTAGAGCAAGCATTGCTGGATGAGACGGGAGAAACCGATAAGGATGTATTGAATGACATCATGCGAGAAGTTGATACTGACAAGGATGGTCGAATCAGTTATGACGAGTTTGTAGCCATGATGAAGACAGGAACTGATTGGAGAAAAGCGTCAAGGCAGTATTCAAGGGAGAGATTCAAGAGCTTGAGCATAAACTTGATGAAGGACGGTTCGCTTCAGCTTCATGACGGGATTAGTGGTCAAGCTATAGTGGTTTGA 1662 0.5042 MGNCNACVRGNDAVSDENDNKNPNGQGRKEKKTRANPFAEEGLLRHSPAPIRVLKDVIPVGPHRSRITDKYILGRELGRGEFGITYLCTDRETKQELACKSISKRKLRTAVDVEDVRREVAIMNALPDHPNVVKLRATYEDDENVHLVMELCAGGELFDRIVARGHYSERAAAHVARTIAEVVRMCHVNGVMHRDLKPENFLFANKKENSVLKAIDFGLSVFFKPGERFTEIVGSPYYMAPEVLKRNYGPEVDVWSAGVILYILLCGVPPFWAETEQGVALAILRGVIDFKREPWPQISDSAKSLVRQMLEPDPKKRLTAEQVLEHSWLQNAKKASNVPLGDIVRTRLKQFSVMNRFKKRALRVIAEHLSVEEVEIIKDMFTLMDTDRDGKVTYEELKAGLKKVGSQLAEPEIRMLMEVADVDGNGVLDYGEFVAVTIHLQRMENDEHIRKAFTFFDKDESGYIELDELEQALLDETGETDKDVLNDIMREVDTDKDGRISYDEFVAMMKTGTDWRKASRQYSRERFKSLSINLMKDGSLQLHDGISGQAIVV 553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271890g00016 553 Gene3D Phosphorylase Kinase; domain 1 72 156 - -
Stsc271890g00016 553 ProSitePatterns EF-hand calcium-binding domain. 493 505 IPR018247 -
Stsc271890g00016 553 ProSiteProfiles EF-hand calcium-binding domain profile. 444 479 IPR002048 GO:0005509
Stsc271890g00016 553 ProSitePatterns EF-hand calcium-binding domain. 385 397 IPR018247 -
Stsc271890g00016 553 Gene3D - 338 513 - -
Stsc271890g00016 553 ProSiteProfiles EF-hand calcium-binding domain profile. 480 515 IPR002048 GO:0005509
Stsc271890g00016 553 SMART efh_1 484 512 IPR002048 GO:0005509
Stsc271890g00016 553 SMART efh_1 448 476 IPR002048 GO:0005509
Stsc271890g00016 553 SMART efh_1 412 440 IPR002048 GO:0005509
Stsc271890g00016 553 SMART efh_1 376 404 IPR002048 GO:0005509
Stsc271890g00016 553 ProSiteProfiles EF-hand calcium-binding domain profile. 372 407 IPR002048 GO:0005509
Stsc271890g00016 553 FunFam Calcium-dependent protein kinase 7 338 513 - -
Stsc271890g00016 553 Gene3D Transferase(Phosphotransferase) domain 1 157 337 - -
Stsc271890g00016 553 ProSitePatterns EF-hand calcium-binding domain. 457 469 IPR018247 -
Stsc271890g00016 553 ProSitePatterns Protein kinases ATP-binding region signature. 77 100 IPR017441 GO:0005524
Stsc271890g00016 553 SUPERFAMILY Protein kinase-like (PK-like) 67 337 IPR011009 -
Stsc271890g00016 553 Pfam Protein kinase domain 73 329 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc271890g00016 553 ProSitePatterns EF-hand calcium-binding domain. 421 433 IPR018247 -
Stsc271890g00016 553 ProSiteProfiles EF-hand calcium-binding domain profile. 408 443 IPR002048 GO:0005509
Stsc271890g00016 553 ProSitePatterns Serine/Threonine protein kinases active-site signature. 191 203 IPR008271 GO:0004672|GO:0006468
Stsc271890g00016 553 FunFam calcium-dependent protein kinase 13 157 337 - -
Stsc271890g00016 553 SUPERFAMILY EF-hand 353 522 IPR011992 -
Stsc271890g00016 553 ProSiteProfiles Protein kinase domain profile. 71 329 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc271890g00016 553 MobiDBLite consensus disorder prediction 1 42 - -
Stsc271890g00016 553 PANTHER SERINE/THREONINE-PROTEIN KINASE 64 505 - -
Stsc271890g00016 553 MobiDBLite consensus disorder prediction 22 39 - -
Stsc271890g00016 553 Pfam EF-hand domain pair 447 510 IPR002048 GO:0005509
Stsc271890g00016 553 Pfam EF-hand domain pair 377 436 IPR002048 GO:0005509
Stsc271890g00016 553 CDD STKc_CAMK 70 328 - -
Stsc271890g00016 553 SMART serkin_6 71 329 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc271890g00016 553 FunFam Calcium-dependent protein kinase 1 73 156 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271890g00016 Stsc-Chr271890 116535 120058 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271890g00016 1 553 EF-hand Containing Proteins AT1G74740 78.339 0.0 900
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Stsc271890g00016 Pkinase 6.6e-75 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271890g00016 K13412 - gmx:100800559 951.044