Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271890g00008 ATGCAAATCAGAATGGAGTTTGCAGTGTGGGGTTTCTTCTTCATTTTCACTACATTTTTATTCTCTACTCCTTCCTCTCTTGCTCTCTCCCAAGATGGTTTGGCCTTGTTGGAAATGAAGAGCACATTGAATGACACAAAAAATGTTCTCAGCAACTGGCAAGAGTTTGATGAATCTCCTTGTTCATGGACTGGTATCTCTTGTTATCCTGATGCTGAACAAAGAGTTAGATTCATAAACCTTCCATACATGCAACTTGGAGGAATCATATCTCCCAGCATTGGCAAACTCAGTAGACTCCAGAGATTGGCACTTCATGAGAACGGCTTGCATGGGATTATTCCTTATGAAATCTCTAATTGTACTGAGCTAAGAGCACTGTACTTAAGGGGTAACTATTTCCAAGGTGGCATACCAGCAGCTATTGGAAATCTCTCCTTTCTGAATATACTTGATTTGTCAAGCAACTCATTGAAAGGTGCTATACCTTCCTCTATTGGCCGCCTCTCACATTTGCAAGTTCTGAACTTGTCCACCAACTTCTTTTCTGGAGAAATCCCTGACATTGGAGTTCTAAGCACCTTTGGGAAGAACTCGTTTATTGGAAATCTAGATCTTTGCGGGCGACAAGTTGAAAAACCATGCCGAACATCACTTGGTTTCCCTGTGGTGCTACCCCATGCTGAAAGTGAAGAAGCTGCAGTCCCTCCCAAAAAAACTTCCCATTACATTAAGTGGTTGGTAATTGGTGCAATGACAACAATGGGGATTGCACTTGTCATAATCCTATCGTTCCTCTGGGTTCGGTTGCTATCGAAGAAGGAAAGAGCTGCTAGGAGATACACAGAAATGAAGAAACAAGTTGATTCAGAATCAAGTAGGAATGGAGCAAAACTTATTACCTTCCATGGTGATCTTCCATATGCCTCATCTGAGATCATAGAGAAGCTCGAGTCTCTCGATGCAGATGATGTAGTAGGGTCAGGAGGATTCGGGACTGTTTACCGGATGGTGATGAATGATTGTGGTACATTTGCTGTCAAGCGGATCGACAGAACTCGGGAAGGGTGTGATCAAGTGTTTGAGAGGGAACTTGAGATCTTGGGAAGCATCAAGCATATAAATCTTGTAAACCTGCGCGGCTACTGCAGGCTCCCTTCTTCAAGGCTCCTTATATATGATTATTTGGCCATGGGAAGCTTAGATGATCTCTTGCATGAAAACACTCAGCAACCACTGAATTGGAGTGATCGCTTAAATATAGCCCTTGGTTCTGCCCGGGGTCTGGCATACTTGCACCATGAGTGCTGTCCTAAAGTTGTACACCGCGACATCAAATCTAGCAACATTCTCCTTGATGAAAACCTGGAGCCTCGTATTTCTGATTTCGGTCTTGCAAGGCTTTTGGTCGATGAAGAGGCTCATGTGACCACAGTGGTTGCCGGCACGTTTGGCTATTTGGCACCAGAGTACCTACAAAGCGGTAGAGCCACTGAAAAGTCAGATGTGTATAGCTTTGGAGTTCTGTTGCTAGAACTTATAACCGGAAAGAGGCCAACGGATCCTTCCTTCGCAAAGCGAGGTTTAAATGTTGTTGGTTGGATGAACACATTGCTGAGAGAAAACAGATTGGATGATGTGGTAGACAAAAGATGCACCGATGTGGATGCAGGAACTCTTGAGGTGATTCTTGATATAGCAGCAAGATGCACGGATGGAAACGCGGATGAACGTCCGTCAATGAATGAGGTGTTACAGTTGCTTGAGCAAGAAGTTATGTCTCCTTGCCCGAGCGAATTCTACGAGTCTCAGTCAGATCGCTGA 1824 0.4419 MQIRMEFAVWGFFFIFTTFLFSTPSSLALSQDGLALLEMKSTLNDTKNVLSNWQEFDESPCSWTGISCYPDAEQRVRFINLPYMQLGGIISPSIGKLSRLQRLALHENGLHGIIPYEISNCTELRALYLRGNYFQGGIPAAIGNLSFLNILDLSSNSLKGAIPSSIGRLSHLQVLNLSTNFFSGEIPDIGVLSTFGKNSFIGNLDLCGRQVEKPCRTSLGFPVVLPHAESEEAAVPPKKTSHYIKWLVIGAMTTMGIALVIILSFLWVRLLSKKERAARRYTEMKKQVDSESSRNGAKLITFHGDLPYASSEIIEKLESLDADDVVGSGGFGTVYRMVMNDCGTFAVKRIDRTREGCDQVFERELEILGSIKHINLVNLRGYCRLPSSRLLIYDYLAMGSLDDLLHENTQQPLNWSDRLNIALGSARGLAYLHHECCPKVVHRDIKSSNILLDENLEPRISDFGLARLLVDEEAHVTTVVAGTFGYLAPEYLQSGRATEKSDVYSFGVLLLELITGKRPTDPSFAKRGLNVVGWMNTLLRENRLDDVVDKRCTDVDAGTLEVILDIAARCTDGNADERPSMNEVLQLLEQEVMSPCPSEFYESQSDR 607
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271890g00008 607 ProSitePatterns Protein kinases ATP-binding region signature. 326 348 IPR017441 GO:0005524
Stsc271890g00008 607 Pfam Leucine rich repeat N-terminal domain 30 68 IPR013210 -
Stsc271890g00008 607 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 396 600 - -
Stsc271890g00008 607 SMART serkin_6 320 593 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc271890g00008 607 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 29 192 - -
Stsc271890g00008 607 Gene3D Ribonuclease Inhibitor 29 217 IPR032675 -
Stsc271890g00008 607 Pfam Protein kinase domain 324 586 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc271890g00008 607 ProSitePatterns Serine/Threonine protein kinases active-site signature. 440 452 IPR008271 GO:0004672|GO:0006468
Stsc271890g00008 607 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 78 589 - -
Stsc271890g00008 607 SUPERFAMILY Protein kinase-like (PK-like) 306 589 IPR011009 -
Stsc271890g00008 607 Gene3D Phosphorylase Kinase; domain 1 279 395 - -
Stsc271890g00008 607 Gene3D Transferase(Phosphotransferase) domain 1 396 598 - -
Stsc271890g00008 607 ProSiteProfiles Protein kinase domain profile. 320 593 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc271890g00008 607 SUPERFAMILY L domain-like 29 214 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271890g00008 Stsc-Chr271890 44134 47768 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271890g00008 13 597 Receptor kinase-like Gene Family AT2G35620 50.085 0.0 564
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XIIIa Stsc271890g00008 Pkinase 5.3e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271890g00008 - - gmx:100803920 1016.53