Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271890g00006 ATGGCGGGTGGGAGACTCTTCACCAATAACACTAACACTCTTATTGATCCTCCTCATCCTCCTCTCTTTCTTTCTTCATCACTTCCTTTTCTCGGTTCTCGATCCATGGTGAGCTTCGAAGATGTTCAAGGAGGGAAGGGGAGTAACAATGGATTGTTCTTCCGCACATACGAGGAGAACGGCGGGGAGGAGGAGGGGATGGAGGAGTACCTGATGCAGCCGGCGGAGAAGAAGCGGCGGCTATCGGCGGAGCAAGTTGAGTTTCTGGAGAAGAGCTTCGAGGAAGAGAACAAGCTGGAGCCAGAGAGGAAGACGAAGCTGGCGAAGGAGCTAGGGCTGCAGCCGAGGCAGGTGGCGATATGGTTCCAGAACCGCCGTGCACGGTGGAAGACGAAGCAGCTTGAGAAGGATTACGATTCGCTTCAGGCTACGTTTGAAAGCCTTAAAGCCAACTATGAAAACCTGCTCAAGGAGAAAGATCGCTTGAAAGCAGAGGTAGCAAGCCTGACGGAGAAGGTGGTTGCGAGGGAGAAACAAGGAGTGAACCCGAATCAAACCGAAGTTAAGAGTAGTGAAACAAACGGAATGCAGGAGCCACCGGCGGCGAATCCTATCGCCGCCACGGTGGATTCAGTTTCATCAGAAGGCGAAGGGTCTAAGGTTTCAGTGAAGAGTGATATCTTGGATTCCGATGATAATCACACTTCAGCCTCCTATGTCTTCGAAGCTGATCAATCGGATCTTTCACAAGACGAGGAAGAGAATCTTATCAGCCGGAGCTTCTTGCATCCGTATATATTCCCTAAACTTGAGAGTGTCGAATACTCCGACCCGCCGGAGACTTCGTGTAGTTTTGGATTCGACCACGAAGATCATCATGCCATTTGGTCATGGTCTTATTGA 903 0.5061 MAGGRLFTNNTNTLIDPPHPPLFLSSSLPFLGSRSMVSFEDVQGGKGSNNGLFFRTYEENGGEEEGMEEYLMQPAEKKRRLSAEQVEFLEKSFEEENKLEPERKTKLAKELGLQPRQVAIWFQNRRARWKTKQLEKDYDSLQATFESLKANYENLLKEKDRLKAEVASLTEKVVAREKQGVNPNQTEVKSSETNGMQEPPAANPIAATVDSVSSEGEGSKVSVKSDILDSDDNHTSASYVFEADQSDLSQDEEENLISRSFLHPYIFPKLESVEYSDPPETSCSFGFDHEDHHAIWSWSY 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271890g00006 300 Gene3D - 127 177 - -
Stsc271890g00006 300 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 64 233 IPR045224 GO:0003700
Stsc271890g00006 300 MobiDBLite consensus disorder prediction 178 229 - -
Stsc271890g00006 300 Pfam Homeodomain 77 130 IPR001356 GO:0003677
Stsc271890g00006 300 Pfam Homeobox associated leucine zipper 132 173 IPR003106 GO:0006355|GO:0043565
Stsc271890g00006 300 ProSitePatterns 'Homeobox' domain signature. 107 130 IPR017970 GO:0000981|GO:0006355
Stsc271890g00006 300 ProSiteProfiles 'Homeobox' domain profile. 72 132 IPR001356 GO:0003677
Stsc271890g00006 300 SMART HOX_1 75 136 IPR001356 GO:0003677
Stsc271890g00006 300 PRINTS Lambda-repressor HTH signature 112 128 IPR000047 GO:0003677
Stsc271890g00006 300 PRINTS Lambda-repressor HTH signature 103 112 IPR000047 GO:0003677
Stsc271890g00006 300 SUPERFAMILY Homeodomain-like 70 134 IPR009057 -
Stsc271890g00006 300 Coils Coil 124 179 - -
Stsc271890g00006 300 CDD homeodomain 77 133 IPR001356 GO:0003677
Stsc271890g00006 300 MobiDBLite consensus disorder prediction 179 198 - -
Stsc271890g00006 300 Gene3D - 80 126 - -
Stsc271890g00006 300 FunFam Homeobox-leucine zipper protein HAT5 70 134 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271890g00006 Stsc-Chr271890 30410 33116 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271890g00006 32 231 Homeobox Transcription Factor Family AT3G01470 46.000 4.13e-49 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Stsc271890g00006 Homeodomain 3.1e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271890g00006 - - gmx:100799054 325.479