Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271889g00018 ATGACCACTACTACTTCAGTTGCTATCCAAGGCAACGAAGAAGCATACGCTTTGCTGAAATGGAAAGCCAGCTTTGAGAAGCAAAGCCAGGCTTTACTCTCTTCATGGAATGGCAGTGACCCCTGCAGCCACTGGGTGGGAATAGCATGTGACGTCTCCAAATCCGTCTCATTGCTAAATTTTACCAACTTTGGGATCAGAGGTACTTTTCAAACTCTCAATTTCTCCTCTCTTCCCAACATCCGCGCAATAGTCTTGAGGAACAACTCCTTTTATGGAACCATTCCCAAACAAGTTGGTGGTTTATCCAATCTGGACACCCTTGATGCTCATGAAAATCAGTTATCTGGTTTCATTCCCAAAAGTATGGGTAATTTGTCTAATCTCACCTTTCTTGATTTGGCTAACAACAATTTATTGGGAATGGTTCCACCGGAGATGGGTAAGCTGGCCAACTTGTCACATCTAGATGTTGGAGTTAACAAGCTCTTCGGCAACTTTCCCCAAGAAATTTGGCATTTGAAAAACTTGAAGTATTTGTCATTTGCATACAATGATAATTTAAGGGGAACCATTCCTGCCGAAATTGGAATGTTGGGGAATCTAACAGAACTGCATTTTGAATACTGCAATCTCACAGGTTCTATCCCAACTACGATAGGCAACTTAACCAATTTATCCATACTCAATTTGTTTGTGAACAATTTACATGGTCCCATTCCTCGAGAAATCGGCAAGTTGGTTAACTTGAAGGCTCTACGGCTTTCAGAAAATGAACTTTCTGGTTCCATTCCTAGAGAGATTGGTCTCATGACAAATCTCTATGAGCTTGATTTTTCTTCAAACAATCTCTCTGGTTCTATTCCTTCCACAATTGGAAATTTAAGCAATTTGATATTTCTATATCTTTTTAGCAATTCTCTCTCTGGTTCAATTCCAGATGAAGTTTTAAAACTTCATTCTCTTACTACCATCCAATTGTTAGATAATAACCTTTCAGGGCCAATCCCACCTTCCATCGGTAACTTGGTGAATTTAAACTCTATTCTTCTTCATGAGAATACACTTCTCGGACCAATCCCTTCTACTATCGGAAAATTGGTGAAGTTAGAGACCCTTGATCTTAGTCAAAATAATCTTTCTGGGCCAATTCCTTCCAGTATCGGAAACTTGACAGAACTCTCGGAACTAGTTTTATTGTCAAATGAACTTAATGGTGAAATTCCAATAGAGTTGAACAAGCTTACCAAATTGGAGAGTCTACAATTGAGTAATAATCGTTTCACTGGCCAGTTGCCTCACAACATCTGCGCCGCTGGAAATTTGGATCACTTTTCAGCCAGCAATAACTACTTCGGAGGAGTAGTTCCAAGTAGTTTAAAGAATTGCTCCAGCCTGGTAAGATTAAGGCTTGACGGGAACCAGATAACTGGAAATATAACTGAATCTTTTGGTGTATATTCAAATTTGAACTACATTGATTTGAGTGACAACAATTTTCATGGCCACCTTTCATCAAAGTGGGGGAAATGTTCCAACCTCACATGCCTCAAGATCTCCAACAACAATCTGTCAGGTCACATACCAACGGAGCTAAGTGAGGCAACCAACTTACAAGAACTTGACTTGTCTTCAAATCATCTTACTGGAGTAATCCCAAAAGAGCTTGGCAAGTTGACTTTGCTGATGAAACTCCTGTTAAGCAACAACAATTTCTCAGGAAATGTTCCCATACAGATTTCATCCTTGCGAGAACTTGAGACCTTGGATCTTGCCAGGAATAATTTCACTGGCTTCATCCAAAAAGAACTCAGCATGTTGCCTAAGTTATCCAACTTGAGTATGGCCCGAAATCAATTTAACGGAACCATTCCCGCTCAGCTTGGGCAACTAGAATCTCTTCATTATCTCGATCTTGGTGGGAATCTGTTGGATGGAACTATTCCGTCATCACTTGGGAAATTGAGTATGTTAGAAACATTGAATCTTTCTCATAACAATCTTTCTGGTGTCATTCCCTCTAATTTTGATGGCATGTTAAGTTTGACATCCGTGGATATATCATACAACCAATTAGAAGGCCCACTTCCAAATACTCCATTTGGCTTCAAAAATGCTACATTTGATGAATTGAGAGATAACAAAGGTTTATGTGGTAATGTCACCGGTATTGAGCCTTGTCCAGCATCATCAAGTGGTGATTCTCCTCATCATCACCATAAACATGTAGTGCTCATATTGATCCTTACTTTGGCCATTATAGCAGTAGCAATCTTAGCTTTATGGATATCATGCCATCTCTTCCAAAGCAAAGACCCAAAAGAAAGCCATGCCACAGAGACACGAACTCACAATTTATTTGCCATATGGAGCTATGATGGCAAGATGGTGTATGAAGACATTATTGAAGCCACTGAAGATTTTGACGACAAATATCTCATCGGAGTTGGAGGCTTTGGATCTGTTTACAAAGCTGAGTTGTCCACCGGTCAAGTTGTTGCTGTCAAGAAGCTCCATTCAACACCAAATGATGAAGAAATGCCTAATCTCAAAACTTTCCACCGAGAGATTCAAGCCTTGACTGAAATCCGTCATCGCAACATTGTGAAGCTGTATGGGTTTTGTTCTCATTCTCGGTGCTGCTTCTTAGTTTATGAGATTATAGAAAGGGGAAGCATTAATAAGATTATGGACAATGATGAAGAAGCCGTTGCGTTCAATTGGGAAAGGAGGGTGAATGCTATTAAAGGAGTGGCTAATGCTTTATCCTACATGCACCATGATTGTTCACCTCCTATGGTGCACAGAGACATATCAGCAAAGAATGTTCTTCTTGATTTGGAATATGAGGCTCATGTATCAGATTTCGGAACATCCAAAATTCTGAATCCAAATTCATCAAATTGGACCTCATTTGCAGGGACCTTTGGTTATGCAGCTCCAGAATTTGCATACACAATGGAAGTGAATGAAAAGTGTGATGTGTATAGCTTTGGGATATTAGCGTTGGAAATACTTTTGGGGAAGCATCCTGGAGATACTACATCATCATCATCATCATGTATGACAATGGCACATGCATCAACACTTGATCATAATAATTCGCTCCTGAAGGATAAGTTGGATCATCGTCTTTCTTTCCCAACGAATCCAACAGTAGCAGTAGATCTTATGCAGATTGTGAAGATAGCAAGTGCATGTTTGATAGAAAATCCACGTTCTCGTCCCACCATGGAACAAGTGGTGAAGGAACTTGTGGTCCCAAACATGGAATAA 3276 0.3999 MTTTTSVAIQGNEEAYALLKWKASFEKQSQALLSSWNGSDPCSHWVGIACDVSKSVSLLNFTNFGIRGTFQTLNFSSLPNIRAIVLRNNSFYGTIPKQVGGLSNLDTLDAHENQLSGFIPKSMGNLSNLTFLDLANNNLLGMVPPEMGKLANLSHLDVGVNKLFGNFPQEIWHLKNLKYLSFAYNDNLRGTIPAEIGMLGNLTELHFEYCNLTGSIPTTIGNLTNLSILNLFVNNLHGPIPREIGKLVNLKALRLSENELSGSIPREIGLMTNLYELDFSSNNLSGSIPSTIGNLSNLIFLYLFSNSLSGSIPDEVLKLHSLTTIQLLDNNLSGPIPPSIGNLVNLNSILLHENTLLGPIPSTIGKLVKLETLDLSQNNLSGPIPSSIGNLTELSELVLLSNELNGEIPIELNKLTKLESLQLSNNRFTGQLPHNICAAGNLDHFSASNNYFGGVVPSSLKNCSSLVRLRLDGNQITGNITESFGVYSNLNYIDLSDNNFHGHLSSKWGKCSNLTCLKISNNNLSGHIPTELSEATNLQELDLSSNHLTGVIPKELGKLTLLMKLLLSNNNFSGNVPIQISSLRELETLDLARNNFTGFIQKELSMLPKLSNLSMARNQFNGTIPAQLGQLESLHYLDLGGNLLDGTIPSSLGKLSMLETLNLSHNNLSGVIPSNFDGMLSLTSVDISYNQLEGPLPNTPFGFKNATFDELRDNKGLCGNVTGIEPCPASSSGDSPHHHHKHVVLILILTLAIIAVAILALWISCHLFQSKDPKESHATETRTHNLFAIWSYDGKMVYEDIIEATEDFDDKYLIGVGGFGSVYKAELSTGQVVAVKKLHSTPNDEEMPNLKTFHREIQALTEIRHRNIVKLYGFCSHSRCCFLVYEIIERGSINKIMDNDEEAVAFNWERRVNAIKGVANALSYMHHDCSPPMVHRDISAKNVLLDLEYEAHVSDFGTSKILNPNSSNWTSFAGTFGYAAPEFAYTMEVNEKCDVYSFGILALEILLGKHPGDTTSSSSSCMTMAHASTLDHNNSLLKDKLDHRLSFPTNPTVAVDLMQIVKIASACLIENPRSRPTMEQVVKELVVPNME 1091
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271889g00018 1091 SUPERFAMILY L domain-like 55 314 - -
Stsc271889g00018 1091 FunFam MDIS1-interacting receptor like kinase 2 888 1091 - -
Stsc271889g00018 1091 SUPERFAMILY L domain-like 511 717 - -
Stsc271889g00018 1091 Pfam Leucine rich repeat N-terminal domain 12 51 IPR013210 -
Stsc271889g00018 1091 ProSiteProfiles Protein kinase domain profile. 808 1087 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc271889g00018 1091 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 415 731 - -
Stsc271889g00018 1091 PRINTS Leucine-rich repeat signature 655 668 - -
Stsc271889g00018 1091 PRINTS Leucine-rich repeat signature 538 551 - -
Stsc271889g00018 1091 Gene3D Ribonuclease Inhibitor 185 405 IPR032675 -
Stsc271889g00018 1091 Gene3D Ribonuclease Inhibitor 406 729 IPR032675 -
Stsc271889g00018 1091 PANTHER LEUCINE RICH REPEAT KINASE 2 364 1088 - -
Stsc271889g00018 1091 FunFam Leucine-rich repeat receptor protein kinase MSP1 771 887 - -
Stsc271889g00018 1091 Gene3D Transferase(Phosphotransferase) domain 1 888 1089 - -
Stsc271889g00018 1091 FunFam Predicted protein 215 313 - -
Stsc271889g00018 1091 Gene3D Ribonuclease Inhibitor 11 184 IPR032675 -
Stsc271889g00018 1091 ProSitePatterns Tyrosine protein kinases specific active-site signature. 933 945 IPR008266 GO:0004672|GO:0006468
Stsc271889g00018 1091 ProSitePatterns Protein kinases ATP-binding region signature. 814 837 IPR017441 GO:0005524
Stsc271889g00018 1091 FunFam Nuclear pore complex protein NUP107 11 158 - -
Stsc271889g00018 1091 Gene3D Phosphorylase Kinase; domain 1 769 886 - -
Stsc271889g00018 1091 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 314 408 - -
Stsc271889g00018 1091 SMART LRR_sd22_2 535 556 - -
Stsc271889g00018 1091 SMART LRR_sd22_2 271 297 - -
Stsc271889g00018 1091 SMART LRR_sd22_2 367 393 - -
Stsc271889g00018 1091 SMART LRR_sd22_2 415 444 - -
Stsc271889g00018 1091 SMART LRR_sd22_2 126 155 - -
Stsc271889g00018 1091 Pfam Leucine rich repeat 79 139 IPR001611 GO:0005515
Stsc271889g00018 1091 Pfam Leucine rich repeat 488 548 IPR001611 GO:0005515
Stsc271889g00018 1091 Pfam Leucine rich repeat 633 692 IPR001611 GO:0005515
Stsc271889g00018 1091 SUPERFAMILY RNI-like 229 572 - -
Stsc271889g00018 1091 SMART LRR_typ_2 126 150 IPR003591 -
Stsc271889g00018 1091 SMART LRR_typ_2 536 559 IPR003591 -
Stsc271889g00018 1091 SMART LRR_typ_2 415 439 IPR003591 -
Stsc271889g00018 1091 SMART LRR_typ_2 199 223 IPR003591 -
Stsc271889g00018 1091 SMART LRR_typ_2 247 271 IPR003591 -
Stsc271889g00018 1091 SMART LRR_typ_2 655 678 IPR003591 -
Stsc271889g00018 1091 SMART LRR_typ_2 367 391 IPR003591 -
Stsc271889g00018 1091 SMART LRR_typ_2 583 606 IPR003591 -
Stsc271889g00018 1091 SMART LRR_typ_2 295 319 IPR003591 -
Stsc271889g00018 1091 SMART LRR_typ_2 607 631 IPR003591 -
Stsc271889g00018 1091 Pfam Leucine Rich Repeat 369 391 IPR001611 GO:0005515
Stsc271889g00018 1091 Pfam Protein kinase domain 810 1084 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc271889g00018 1091 SUPERFAMILY Protein kinase-like (PK-like) 789 1085 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271889g00018 Stsc-Chr271889 165480 170463 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271889g00018 13 981 Receptor kinase-like Gene Family AT4G08850 44.184 0.0 763
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Stsc271889g00018 Pkinase 7.7e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271889g00018 - - gsj:114395001 1164.06