Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271888g00015 ATGGATTTCGTCCCCACTACTGTGATTTCATCACAGTATCTTGATGTAGAACATTCACGTGCTTTAAGTTTTGATGAGATTGGGAATAATGAGAATGATGATGGAGATAATAATGGGAAAGGTGAAAGAGTGCATATCAAATCATCATCATTAATAAGGCTAAATAGAACTTTTTCTGTCCATAGCCAATCAGAGCAGAGAAGAAGCGATAGAATTAATCAGAAGATGAAAGCATTGCAGAGATCAGTCCCTAATGCAAATAAGACGGACAAAACTTCAATGTCAGATGAGGTGATTAGCATAAATGCACCTGTAATGGTACATTTGAATGGGAAATAA 339 0.3599 MDFVPTTVISSQYLDVEHSRALSFDEIGNNENDDGDNNGKGERVHIKSSSLIRLNRTFSVHSQSEQRRSDRINQKMKALQRSVPNANKTDKTSMSDEVISINAPVMVHLNGK 112
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271888g00015 112 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 56 105 IPR011598 GO:0046983
Stsc271888g00015 112 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 29 99 IPR031066 -
Stsc271888g00015 112 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 58 94 IPR036638 GO:0046983
Stsc271888g00015 112 Gene3D - 53 101 IPR036638 GO:0046983
Stsc271888g00015 112 MobiDBLite consensus disorder prediction 57 95 - -
Stsc271888g00015 112 MobiDBLite consensus disorder prediction 76 95 - -
Stsc271888g00015 112 Pfam Helix-loop-helix DNA-binding domain 61 93 IPR011598 GO:0046983
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271888g00015 47 99 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G00050 56.604 1.44e-13 63.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Stsc271888g00015 HLH 4.4e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271888g00015 - - aip:107624044 90.8929