Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Stsc271888g00015 | ATGGATTTCGTCCCCACTACTGTGATTTCATCACAGTATCTTGATGTAGAACATTCACGTGCTTTAAGTTTTGATGAGATTGGGAATAATGAGAATGATGATGGAGATAATAATGGGAAAGGTGAAAGAGTGCATATCAAATCATCATCATTAATAAGGCTAAATAGAACTTTTTCTGTCCATAGCCAATCAGAGCAGAGAAGAAGCGATAGAATTAATCAGAAGATGAAAGCATTGCAGAGATCAGTCCCTAATGCAAATAAGACGGACAAAACTTCAATGTCAGATGAGGTGATTAGCATAAATGCACCTGTAATGGTACATTTGAATGGGAAATAA | 339 | 0.3599 | MDFVPTTVISSQYLDVEHSRALSFDEIGNNENDDGDNNGKGERVHIKSSSLIRLNRTFSVHSQSEQRRSDRINQKMKALQRSVPNANKTDKTSMSDEVISINAPVMVHLNGK | 112 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Stsc271888g00015 | 112 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 56 | 105 | IPR011598 | GO:0046983 | |
Stsc271888g00015 | 112 | PANTHER | TRANSCRIPTION FACTOR PIF1-RELATED | 29 | 99 | IPR031066 | - | |
Stsc271888g00015 | 112 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 58 | 94 | IPR036638 | GO:0046983 | |
Stsc271888g00015 | 112 | Gene3D | - | 53 | 101 | IPR036638 | GO:0046983 | |
Stsc271888g00015 | 112 | MobiDBLite | consensus disorder prediction | 57 | 95 | - | - | |
Stsc271888g00015 | 112 | MobiDBLite | consensus disorder prediction | 76 | 95 | - | - | |
Stsc271888g00015 | 112 | Pfam | Helix-loop-helix DNA-binding domain | 61 | 93 | IPR011598 | GO:0046983 |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Stsc271888g00015 | 47 | 99 | Basic Helix-Loop-Helix Transcription Factor Gene Family | AT4G00050 | 56.604 | 1.44e-13 | 63.5 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | bHLH | Stsc271888g00015 | HLH | 4.4e-05 | No_clan |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Stsc271888g00015 | - | - | aip:107624044 | 90.8929 |