Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271888g00007 ATGGAAACTGGGGATGGAACTAGCAATGCAGATAACCCTGATCAGAGACCAGGAATGGATAGGTGCTTGTATTCCGAAGGTGTAAATGATGGAGTGGTAAATGCTGATGGGAGTGGTGCTGCTGAGGGCAAAGAAATTAGGAACTTAAAGATGGAAGCTGTAAATACCAAAGTGCCAATTGATGATGGGCGTTTTCGGACATATAAGAGGCGGAAACATGTAAAGATGAGTTGTTCTGAAAGCAAAGCTAAGGAAGAAAGCAGAGAGTGTGTGGAAGCTGCAAGTCACTTTTCAGAACAGGCTGTGAAGAAACCACGTGGTATAGCTGTAGGCAGTACTTCAAGAGATTACTCAAATGGCCAAGAATGCTCTTCACAGTTTGAGGGGTCCTCTCATAGGTTACAGTCTGAAGCTAATGGCCATGCATATGTCATGCATGATGGTTGTTCAAGTGAATCAGATGGCAATGGTGTTACTCAGAAGTGTCAGCGTGTGTTCCAAAATATCTTAGCCTCTGAAAAATTCAGTTCATTATGTAAGGTGCTACTTGAAAATTTTAATGAAATGAAACCTGAGAGTTTATTTGACTTTAGTGTCATAAATTCAAGGATGAAAGAAGCAGCTTATGAACAATCACCTACACTTTTCTTGTCAGATTTTCAACAGGTTTGGAGAAAGCTTGAAGACACTGGAAATGAGATTGTTGCTATAGCAAAGAGTCTTTCCAACATGTCAAGAACATATTACTGTGAGCATTTGGGTAACCATGCATTGGACACTGTTATGAGGCAACAGCAGGCAGAAGTTTGTAATNNNNNNNNNNTCTGCAATTGCAGGCAATGTGGAGGCAAGGCAGATGGGACAGACTCTTTGATTTGTGATTCATGTGAGGAGTTCTATCATTTATCTTGTATCGTGCCGGCTCTGAAGAAATTACCTGAAAAAAGCTGGTTCTGTGCCAACTGTGCTGCAATTGGAATAAGATCTCCACATGACAATTGTGTGGTGTGTGAAAGGTTGAATGCTCCGAAGTCCTTGAACAACATTATTGGTGAGGAGAGCATCCCTACAAATGATGAAACACACAATGAATTGGAGGAAAATTCAAATTGTACATATGATGGGATCCAGGGGTCCATAGGTAAAAGAAACTTGCCTGATTGCAAAATTTGTAGGGAGGGAGTAGATGGGGACAAAGTACGGATATGCAGTCACAATGCATGCCCTAGTAAACACTATCATGTAAGGTGTTTGTCCCCTAATCAGGTCAAAAAATATGGTCCCTGTTGGTACTGCCCTTCTTGTTTATGTCAAGGCTGCCACACTGATCGAGATGATCACATGATTGTTCTCTGTGATGGTTGCGACCATGGATACCACATCGATTGCATGGAGCCTAAACGGACTGCCATTCCAAAAGGCAAATGGTTCTGCAGAAAATGTGATGCAGAGATCCAAGCAATATTCCGGGCGAAAAATGCATATGAGAGTCTAAATTTTAGAAGTGGCGAAAATATTTCAAAACCCAAGTATAAGCTTGGTAAGAAATGGAAACGAGGGCGAGAATTGGAGAAAGATGGAGGAATGGACATGCTTTTAACAGCTGCCAACACACTTAAATTTGAAGAGAACTTAGCTAGTAGCTAG 1647 0.4123 METGDGTSNADNPDQRPGMDRCLYSEGVNDGVVNADGSGAAEGKEIRNLKMEAVNTKVPIDDGRFRTYKRRKHVKMSCSESKAKEESRECVEAASHFSEQAVKKPRGIAVGSTSRDYSNGQECSSQFEGSSHRLQSEANGHAYVMHDGCSSESDGNGVTQKCQRVFQNILASEKFSSLCKVLLENFNEMKPESLFDFSVINSRMKEAAYEQSPTLFLSDFQQVWRKLEDTGNEIVAIAKSLSNMSRTYYCEHLGNHALDTVMRQQQAEVCNXXXXCNCRQCGGKADGTDSLICDSCEEFYHLSCIVPALKKLPEKSWFCANCAAIGIRSPHDNCVVCERLNAPKSLNNIIGEESIPTNDETHNELEENSNCTYDGIQGSIGKRNLPDCKICREGVDGDKVRICSHNACPSKHYHVRCLSPNQVKKYGPCWYCPSCLCQGCHTDRDDHMIVLCDGCDHGYHIDCMEPKRTAIPKGKWFCRKCDAEIQAIFRAKNAYESLNFRSGENISKPKYKLGKKWKRGRELEKDGGMDMLLTAANTLKFEENLASS 548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271888g00007 548 ProSiteProfiles Zinc finger PHD-type profile. 434 484 IPR019787 -
Stsc271888g00007 548 MobiDBLite consensus disorder prediction 1 22 - -
Stsc271888g00007 548 ProSitePatterns Zinc finger PHD-type signature. 276 322 IPR019786 -
Stsc271888g00007 548 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 382 443 IPR013083 -
Stsc271888g00007 548 SMART PHD_3 387 436 IPR001965 -
Stsc271888g00007 548 SMART PHD_3 275 323 IPR001965 -
Stsc271888g00007 548 SMART PHD_3 439 482 IPR001965 -
Stsc271888g00007 548 PANTHER OS02G0192300 PROTEIN 410 483 - -
Stsc271888g00007 548 SUPERFAMILY FYVE/PHD zinc finger 384 436 IPR011011 -
Stsc271888g00007 548 SUPERFAMILY FYVE/PHD zinc finger 436 486 IPR011011 -
Stsc271888g00007 548 ProSiteProfiles Zinc finger PHD-type profile. 275 325 IPR019787 -
Stsc271888g00007 548 Gene3D - 169 324 - -
Stsc271888g00007 548 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 444 512 IPR013083 -
Stsc271888g00007 548 Pfam PHD-finger 437 483 IPR019787 -
Stsc271888g00007 548 Pfam PHD-finger 278 323 IPR019787 -
Stsc271888g00007 548 SUPERFAMILY FYVE/PHD zinc finger 277 324 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271888g00007 Stsc-Chr271888 82161 89817 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271888g00007 436 503 C2H2 Transcription Factor Family AT3G01460 35.294 6.01e-09 57.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Stsc271888g00007 PHD 5.5e-11 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271888g00007 - - aip:107609089 905.59