Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271887g00014 ATGGACTCTCGAACACAGTATAATCCTCGCACCGTCGAAGAGGTTTTTAGGGATTTCAAGGGCCGCCGAGCTGGTCTTATCAAAGCCCTCACCACCGATGTTGAGGAATTCTACAACCAATGTGACCCTGAGAAGGAGAACTTGTGCTTGTACGGCTTTCCTAGCGAGCAGTGGGAAGTAAATTTACCTGCTGAAGAAGTTCCACCCGAGCTTCCTGAGCCTGTGCTGGGCATTAACTTTGCTAGGGATGGCATGCAAGAAAAGGACTGGTTATCTTTGGTTGCTGTTCACAGCGATGCGTGGTTACTTGCTATTGCCTTCTATTTTGGAGCCAGATTTGGTTTTGATAAAGCTGACAGGAAACGCCTTTTCAATATGATTAATGAAGTGCCAACAATATTTGAAGTTGTTACTGGTGCAGCAAAGAAACAAGTGAAGGAGAAGTCTTCAGTTTCGAACCATAGCGGCAGCAAATCGAAGTCCAACTCTAAAGCACGTGCTCCGGAACCTCAGGCTAGGCAGTCAAAGGCATTGCAAGCAAAAGACAAGGACGAAGAACTGGACGAGCAAGAAGATGATGATGAACACGGGGAAACCTTGTGCGGGGCATGTGGCGAGCATTATGGCACTGACGAATTCTGGATTTGCTGTGACATTTGTGAGAAGTGGTTCCACGGGAAATGTGTGAAGATCACCCCTGCTAGGGCAGAGCATATCAAGCAATACAAGTGCCCATCATGCAGTAACAAGCGATCTCGCCCCTGA 765 0.4758 MDSRTQYNPRTVEEVFRDFKGRRAGLIKALTTDVEEFYNQCDPEKENLCLYGFPSEQWEVNLPAEEVPPELPEPVLGINFARDGMQEKDWLSLVAVHSDAWLLAIAFYFGARFGFDKADRKRLFNMINEVPTIFEVVTGAAKKQVKEKSSVSNHSGSKSKSNSKARAPEPQARQSKALQAKDKDEELDEQEDDDEHGETLCGACGEHYGTDEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSCSNKRSRP 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271887g00014 254 MobiDBLite consensus disorder prediction 150 169 - -
Stsc271887g00014 254 SMART PHD_3 200 248 IPR001965 -
Stsc271887g00014 254 MobiDBLite consensus disorder prediction 145 195 - -
Stsc271887g00014 254 PANTHER CPG BINDING PROTEIN 8 253 IPR045104 GO:0006355|GO:0042393
Stsc271887g00014 254 FunFam PHD finger alfin-like protein 193 249 - -
Stsc271887g00014 254 ProSitePatterns Zinc finger PHD-type signature. 201 247 IPR019786 -
Stsc271887g00014 254 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 190 249 IPR013083 -
Stsc271887g00014 254 Pfam Alfin 11 139 IPR021998 GO:0006355|GO:0042393
Stsc271887g00014 254 CDD PHD_AL_plant 200 250 IPR044104 -
Stsc271887g00014 254 ProSiteProfiles Zinc finger PHD-type profile. 198 250 IPR019787 -
Stsc271887g00014 254 Pfam PHD-finger 201 250 IPR019787 -
Stsc271887g00014 254 Coils Coil 173 193 - -
Stsc271887g00014 254 SUPERFAMILY FYVE/PHD zinc finger 189 252 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271887g00014 Stsc-Chr271887 111148 115376 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271887g00014 7 253 Alfin-like Transcription Factor Family AT3G42790 75.709 1.39e-125 355
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Stsc271887g00014 Alfin 3.1e-69 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271887g00014 K26274 - gmx:100170700 465.307