Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271887g00003 ATGTTAACTTGCATAGCATGTTCCAAGCAACTCAACAATGGATCTCTTCACCAGCCAGAAGATGAAGAAGCTGCTCATACACCAAGCACAAAGCAAGCAATAAAGGCTCTCACTGCCCAGATCAAGGACATGGCTGTGAAGGCTTCTGGAGCATATAAGAATTGCAAGCCTTGTTCTGGATCTTCAAACGGTAACAGGAAAGGGAATTATGCTGATTCTGATATGGGTTCGGATTCAGCGAGGTTTCACTGGGCCTACCGAAGAACGTGTAGCTCCAATTCAACCCCAAGGATGTGGGGGAAGGAAATGGAAGCCAGGTTGAAAGGGCTTTCGAGTGGGGAAGGGACGCCGGCATCGGTTAGTGGACGAACTGAGTCAGTGGTGTTCATGGAGGAGGATGAGCCTAAAGAATGGGTTGCACAAGTGGAGCCCGGTGTGCTCATTACTTTTGTTTCGTTGCCTCAGGGTGGGAATGATCTGAAGCGCATACGGTTCAGTCGAGAGATGTTTAATAAATGGCAAGCTCAGAGGTGGTGGACGGAAAACTATGACAAGGTCATGGAGTTATACAATGTTCAAAGGTTCAATCAACAAGCTGTTCCTCTTCCAACCCCGCCTATATCTGAAGATGAGCAAAGTTCAAGGATTGAATCTGTGAGGGACAGCCCTGTAACTCCACCTCTTAGCAAAGAGCCGCTGCCTAGTCATTTTCGCCACCCACTCGGAATGGGTTATTCTTCATCAGATTCACTGGATCACCACCAAACACAACCTCGCCCTTGCTATGAAACTAGTGGTCTAGCCTCAACACCTAAACTCTCCAACATTACTGCAACAAAAACTGAAAGATCATCCCTGGATGCTTCAGCAAGAACAAGTTCATCGGGAGAGGGAGACCACTCAGGTGAGCTCTCAATCAGCAATGCCAGTGATATGGAAACTGAATGGGTTGAACAGGATGAACCGGGAGTATACATCACTATCAGAGCACTGCCAGGTGGAACCAGAGAACTTCGGCGAGTACGGTTCAGCCGAGAGAGGTTCGGAGAAATGCATGCTAGATTATGGTGGGAGGAGAACCGTGCGAGGATACAGGAGCAATACTTGTGA 1110 0.4811 MLTCIACSKQLNNGSLHQPEDEEAAHTPSTKQAIKALTAQIKDMAVKASGAYKNCKPCSGSSNGNRKGNYADSDMGSDSARFHWAYRRTCSSNSTPRMWGKEMEARLKGLSSGEGTPASVSGRTESVVFMEEDEPKEWVAQVEPGVLITFVSLPQGGNDLKRIRFSREMFNKWQAQRWWTENYDKVMELYNVQRFNQQAVPLPTPPISEDEQSSRIESVRDSPVTPPLSKEPLPSHFRHPLGMGYSSSDSLDHHQTQPRPCYETSGLASTPKLSNITATKTERSSLDASARTSSSGEGDHSGELSISNASDMETEWVEQDEPGVYITIRALPGGTRELRRVRFSRERFGEMHARLWWEENRARIQEQYL 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271887g00003 369 MobiDBLite consensus disorder prediction 200 310 - -
Stsc271887g00003 369 Pfam Transcription factor regulating root and shoot growth via Pin3 313 368 IPR013591 -
Stsc271887g00003 369 Pfam Transcription factor regulating root and shoot growth via Pin3 136 190 IPR013591 -
Stsc271887g00003 369 MobiDBLite consensus disorder prediction 248 310 - -
Stsc271887g00003 369 Pfam Transcription factor BRX N-terminal domain 22 58 IPR027988 -
Stsc271887g00003 369 ProSiteProfiles BRX domain profile. 136 191 IPR013591 -
Stsc271887g00003 369 PANTHER PROTEIN BREVIS RADIX-LIKE 1 1 369 IPR044532 -
Stsc271887g00003 369 ProSiteProfiles BRX domain profile. 314 369 IPR013591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271887g00003 Stsc-Chr271887 27813 32090 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271887g00003 1 369 Major Intrinsic Protein MIP AT1G31880 46.632 5.97e-99 296
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271887g00003 - - gmx:100805480 656.751