Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271886g00027 ATGGTGGTTCGAAAAGTAGGCAAGTACGAGATAGGGAGGACGATTGGGGAAGGAACCTTCGCGAAGGTGAAGTTCGCTCAGAACACTGAGACCGGTGAGAGTGTCGCCATGAAAGTTCTTGACCGCGCCACCATAATCAAGCACAACATGGTAGACCAGATCAAGAGGGAGATTTCTATTATGAAGCTAGTGAGGCATCCCTATGTTGTTCGCTTGCATGAGGTTCTAGCAAGCAGAACGAAGATTTATATCATATTGGAGTTCATTACAGGTGGTGAATTATTCGATAAAATTATACATCATGGACGTCTTAGCGAGGCTGAAGCTAGAAGATATTTCCAACAGCTTATTGATGGTGTAGATTATTGCCACAGCAAGGGAGTCTATCACAGAGATTTAAAGCCAGAGAATCTTTTACTTGATTCACAAGGCAATATAAAAATTTCAGATTTTGGTTTAAGCGCATTACCAGAACAGGGTGTTAGTCTCCTTCGGACAACTTGCGGCACTCCAAACTATGTAGCTCCTGAGGTACTCAGTCACAAGGGCTACAATGGTGCTGTGGCAGATGTTTGGTCCTGTGGGGTTATCCTCTATGTCCTGTTGGCTGGATACCTTCCCTTTGATGAGCTTGATCTAACCACCTTATACAGTAAGATTAACAAAGCAGACTTTTCATGCCCTTCTTGGTTTCCTGTGGGGGCGAAATCATTGATATGTAGAATTTTGGATACAAATCCTGAAACGCGTATAACCATAGAACAGATAAGAAATGATGAATGGTTTCAGAGGGGCTACATTCCAGTCAGCCTTCAGGAGCATGAAGATGTAAATCTGGATGACGTAAATGCTGCCTTTGATGATGCCGAGGAAGAGAGAGATAATCATCAATGCCATAATGAAGACATGGGTCCCTTATTGCTTAATGCATTTGACTTGATCATTCTATCTCAAGGCTTAAACCTCGCATCTATGTTTGACCGTGGACAGGACTCTCTTAAACATCACACACGTTTTATATCTCAAAAGCCAGCAAAGGTGGTTTTGTCAAGTATGGAAGTTGTGGCCCAATCAATGGGATATAAGACACATATTCGCAACTTTAAGATGAGAATAGAGGGTGTCTCAGCAAATAAAACATCTTTTTTCTCGGTTATTCTGGAGATTTTTGAGGTGGCTCCCACATTTTATATGGTGGACATTCAGAAAGCAGCTGGAGACGCCGGCGAATTTCTCAATTTTTACAAGAGTTTTTGTGGCAATCTTGACGAAATAATCTGGAAACCGCCTCATGAAGTAAGCAAACCAAGAATCTCTAAGACCAAAAGCAAAAGGCGATAG 1341 0.4206 MVVRKVGKYEIGRTIGEGTFAKVKFAQNTETGESVAMKVLDRATIIKHNMVDQIKREISIMKLVRHPYVVRLHEVLASRTKIYIILEFITGGELFDKIIHHGRLSEAEARRYFQQLIDGVDYCHSKGVYHRDLKPENLLLDSQGNIKISDFGLSALPEQGVSLLRTTCGTPNYVAPEVLSHKGYNGAVADVWSCGVILYVLLAGYLPFDELDLTTLYSKINKADFSCPSWFPVGAKSLICRILDTNPETRITIEQIRNDEWFQRGYIPVSLQEHEDVNLDDVNAAFDDAEEERDNHQCHNEDMGPLLLNAFDLIILSQGLNLASMFDRGQDSLKHHTRFISQKPAKVVLSSMEVVAQSMGYKTHIRNFKMRIEGVSANKTSFFSVILEIFEVAPTFYMVDIQKAAGDAGEFLNFYKSFCGNLDEIIWKPPHEVSKPRISKTKSKRR 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271886g00027 446 FunFam Non-specific serine/threonine protein kinase 1 88 - -
Stsc271886g00027 446 SMART serkin_6 9 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc271886g00027 446 Coils Coil 279 299 - -
Stsc271886g00027 446 ProSitePatterns Protein kinases ATP-binding region signature. 15 47 IPR017441 GO:0005524
Stsc271886g00027 446 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 7 404 - -
Stsc271886g00027 446 Pfam Protein kinase domain 9 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc271886g00027 446 Gene3D Kinase associated domain 1, KA1 306 428 - -
Stsc271886g00027 446 FunFam Non-specific serine/threonine protein kinase 2 302 - -
Stsc271886g00027 446 ProSitePatterns Serine/Threonine protein kinases active-site signature. 128 140 IPR008271 GO:0004672|GO:0006468
Stsc271886g00027 446 SUPERFAMILY Protein kinase-like (PK-like) 6 278 IPR011009 -
Stsc271886g00027 446 ProSiteProfiles Protein kinase domain profile. 9 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc271886g00027 446 Pfam NAF domain 306 363 IPR004041 GO:0007165
Stsc271886g00027 446 FunFam Non-specific serine/threonine protein kinase 303 427 - -
Stsc271886g00027 446 Gene3D Transferase(Phosphotransferase) domain 1 3 305 - -
Stsc271886g00027 446 CDD CIPK_C 309 419 - -
Stsc271886g00027 446 ProSiteProfiles NAF domain profile. 303 327 IPR018451 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271886g00027 Stsc-Chr271886 209155 213699 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271886g00027 1 388 CBL-interacting serine-threonine protein kinases AT4G24400 82.474 0.0 669
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Stsc271886g00027 Pkinase 3e-72 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271886g00027 - - gmx:100813117 816.224