Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271886g00025 ATGGGGAGAGGGAAGATCGTGATAAGGAGGATCGATAACTCGACCAGCAGGCAAGTGACGTTCTCGAAGCGGAGAAGCGGTTTGCTGAAGAAGGCAAAGGAACTTTCTATTCTTTGCGATGCTGAGGTTGGAGTTACGATCTTCTCCAGCACTGGAAAACTCTATGAGTACGCCAGTACCAGCATGAAATCAGTGATTGATCGATACAGCAAAACAAAAGAGGAGCATAACCCACTTGGAAGTTCAACGTCTGAGATTAAGTTTTGGCAAAGGGAGGCAGCAATGTTAAGGCAACAATTGCAGAACCTGCAAGAAAGTCATCGGCAAATGATGGGAGAAGAACTGTCAGGAATGACTGTCAAAGATTTACAGAGTTTAGAGAACCAACTGGAAGTTAGCCTCCACGGTGTCCGTGCAAAAAAGGAACAACTTTTAATGGAGGAAATACAGGAACTGAATCGAAAGGGAAACCTCATACACCAAGAAAATATGGAATTGTATAAGAAGGTAAACCTAATTCGTCAAGAAAACATGGAATTGAAGAAGAAGGTCTACGGAACAAGAAATGGGAGGGGAACAGACAGAAACACTGTTCAAACAAATGGTATAGGCATAGAGGAAGACTTGCAGGTTCCTGTGAATCTCCAGCTAAGCCAACCACAGCAACAGAACTATGAGGCCACTTCAGGAGCCACAAAGTTGGGATTGTAG 711 0.4388 MGRGKIVIRRIDNSTSRQVTFSKRRSGLLKKAKELSILCDAEVGVTIFSSTGKLYEYASTSMKSVIDRYSKTKEEHNPLGSSTSEIKFWQREAAMLRQQLQNLQESHRQMMGEELSGMTVKDLQSLENQLEVSLHGVRAKKEQLLMEEIQELNRKGNLIHQENMELYKKVNLIRQENMELKKKVYGTRNGRGTDRNTVQTNGIGIEEDLQVPVNLQLSQPQQQNYEATSGATKLGL 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271886g00025 236 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Stsc271886g00025 236 FunFam MADS-box transcription factor MADS-MC 13 85 - -
Stsc271886g00025 236 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Stsc271886g00025 236 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Stsc271886g00025 236 SUPERFAMILY SRF-like 2 86 IPR036879 GO:0003677|GO:0046983
Stsc271886g00025 236 Pfam K-box region 83 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Stsc271886g00025 236 Coils Coil 163 183 - -
Stsc271886g00025 236 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
Stsc271886g00025 236 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Stsc271886g00025 236 Gene3D - 13 92 IPR036879 GO:0003677|GO:0046983
Stsc271886g00025 236 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Stsc271886g00025 236 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Stsc271886g00025 236 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Stsc271886g00025 236 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 207 - -
Stsc271886g00025 236 Coils Coil 86 113 - -
Stsc271886g00025 236 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271886g00025 Stsc-Chr271886 180287 195702 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271886g00025 1 231 MADS-box Gene Family AT2G22630 56.540 8.06e-90 263
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Stsc271886g00025 K-box 5.7e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271886g00025 K09264 - gmx:100812413 380.948