Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271886g00020 ATGTCTACCCAAGGGGTGCGGTTGCACATCAAAGATCGCTATGTGGTGATGGATAATGGTATAGTTCAAGTGACGTTATCAAATCCAGGTGGAATTGTTACTGGTGTAGCTTATAATGGTGTTGATAATTTGCTTGAAGTTCTCAACAAAGAGAATAACAGAGGGTACTGGGATCTTGTTTGGGGTGCACCAGGAATCAAAGGAACCTTTGATGTGATTCAAGGAACGTTTTTCAGAGTTATAGTTCAAAATGATGAACAAGTGGAGGTTTCATTCACAAGAATGTGGGATCCTTCTCTTGAGGGAAAGTTTGTCCCCTTAAACATCGATAAAAGATTCATACTGCTCCGAGGTTCATCAGGCTTCTACTCTTATGGAATTTATGAGCACTTAAGTGGGTGGCCAGACTTTGATCTTAGTGAAACAAGGATCACTTTTAAGCTTAGGAAACACATGTTTCAATACATGGCTATGGCGGACAACAGGCGAAGGCTTTTGCCTCTTCCAGATGATCGATTACCAGGAAGATGCCAAACCTTGGCATACCCAGAAGCTGTCAAATTAATCAATCCCAAGGATCCTCAACTAAAAGACGAGGTGGATGACAAGTATCAATATTCATGCGACAACATAGACAATAAAGTCCACGGATGGATATCTTTCAATCCGCCAGTGGGATTTTGGCAGATCACACCGAGCGACGAATTTCGTTCCGGCGGGCCCCACAAGCAGAATTTGACCTCACATGTAGGCCCCACCACACTTGCAATGTTTCTTAGTGGTCACTATGCGGGGCAAGATTTGAACCCCAAATTTAAAGATGGTGAACCATGGAAGAAGGTTTTTGGTCCTGTATTCATATATCTTAATTCTGGACCAGTTGGTGATGACCCACATTGGCTCTGGGAGGATGCAAAAATACAGATGATGAATGAAGTTCAAAGCTGGCCATATTCTTTCCCTGCTTCGGAGGATTTTCCAAAGTCGGATCAAAGGGGCAACGTTGGTGGCAGACTACTCGTTTTAGACAGGTTTGTCAGAACAGACTTGATATCTGCAAATGGTGCTTATGTTGGTCTAGCCCCACCAGGCGATGCCGGATCATGGCAAAGAGAATGCAAGCACTATCAATTCTGGACCAGAGCAGATGAGAATGGATTTTTTACAATCAGGAACATTCGTGCTGGTGACTATAACCTTTATGCTTGGGTTCCTGGTTTTGTAGGGGACTACAAATTGGGTGATTTGATGAAGATAACCCCAGGTATTCCTGATCGATCTGCCGCAGAATTTTATGTTCCTGATCCCAAGCCAGAACATATTAATAAGCTTTTTATCAACCATCCTGAAAGGTTCAGACAATACGGATTATGGGAAAGGTATACAGAATTGTATCCAGATTCAGATTTGGTTTACACAGTTGGTGTCAGTGACTATAGAAGGGATTGGTTTTATGCCCATATTCCCAGAAAGAAAGAGGATAATACTCACCAAGGAACAACTTGGCAAATCAAGTTTGAACTCAATGATGTGGTTCAAGGAAGTACTTATAAATTGAGAGTTGCAATTGCATCTGCAACATTAGCTGAATTGCAGATTCGAGTAAACGATCCGAATGCGAGGCGTCCTGTGTTTACGACTGGGTTAATAGGGAGGGATAACTCAATTGCAAGACATGGAATTCATGGACTGTATTGGCTTTACAGTGTGAATGTACCTGGTTCTCTTCTTATAAATGGCACCAACACTTTATATTTGACTCAACCACGTTGCAACAATTGTTTCCAGGGTATCATGTATGATTATATTCGTATGGAAGGACCACCTTGA 1830 0.4213 MSTQGVRLHIKDRYVVMDNGIVQVTLSNPGGIVTGVAYNGVDNLLEVLNKENNRGYWDLVWGAPGIKGTFDVIQGTFFRVIVQNDEQVEVSFTRMWDPSLEGKFVPLNIDKRFILLRGSSGFYSYGIYEHLSGWPDFDLSETRITFKLRKHMFQYMAMADNRRRLLPLPDDRLPGRCQTLAYPEAVKLINPKDPQLKDEVDDKYQYSCDNIDNKVHGWISFNPPVGFWQITPSDEFRSGGPHKQNLTSHVGPTTLAMFLSGHYAGQDLNPKFKDGEPWKKVFGPVFIYLNSGPVGDDPHWLWEDAKIQMMNEVQSWPYSFPASEDFPKSDQRGNVGGRLLVLDRFVRTDLISANGAYVGLAPPGDAGSWQRECKHYQFWTRADENGFFTIRNIRAGDYNLYAWVPGFVGDYKLGDLMKITPGIPDRSAAEFYVPDPKPEHINKLFINHPERFRQYGLWERYTELYPDSDLVYTVGVSDYRRDWFYAHIPRKKEDNTHQGTTWQIKFELNDVVQGSTYKLRVAIASATLAELQIRVNDPNARRPVFTTGLIGRDNSIARHGIHGLYWLYSVNVPGSLLINGTNTLYLTQPRCNNCFQGIMYDYIRMEGPP 609
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271886g00020 609 CDD RGL4_M 331 422 IPR029413 -
Stsc271886g00020 609 Pfam Polysaccharide lyase family 4, domain II 354 422 IPR029413 -
Stsc271886g00020 609 CDD RGL4_N 6 292 - -
Stsc271886g00020 609 FunFam Rhamnogalacturonate lyase B 328 425 - -
Stsc271886g00020 609 Gene3D - 9 304 IPR014718 GO:0030246
Stsc271886g00020 609 Gene3D - 330 413 - -
Stsc271886g00020 609 SUPERFAMILY Galactose-binding domain-like 422 606 IPR008979 -
Stsc271886g00020 609 Gene3D - 419 606 - -
Stsc271886g00020 609 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 11 422 - -
Stsc271886g00020 609 Pfam Polysaccharide lyase family 4, domain III 422 605 IPR029411 -
Stsc271886g00020 609 CDD RGL4_C 422 606 - -
Stsc271886g00020 609 SUPERFAMILY Galactose mutarotase-like 19 296 IPR011013 GO:0003824|GO:0005975|GO:0030246
Stsc271886g00020 609 SUPERFAMILY Starch-binding domain-like 373 408 IPR013784 GO:0030246
Stsc271886g00020 609 Pfam Rhamnogalacturonate lyase family 9 200 IPR010325 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271886g00020 Stsc-Chr271886 149547 155010 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271886g00020 1 609 Polysaccharide Lyase AT1G09910 67.880 0.0 910
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271886g00020 K18195 - gmx:100814185 1080.09