Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271886g00019 ATGAAGACACAACTAGGGGTGCAACTCACCACTGAAGATCGTCATGTGGTGATGGAGAATGGAATTGTAAGAGTAACGATTTCAAATCCAGAAGGAATAGTGACTGGAATTCAGTATAATGGAATCGACAACTTGCTTGAAGTTTTGAATGACAAATCTAATAGAGGGTATTGGGACCTTGTTTGGAGCTCACCAACAAGTTCAGGAACCACTGGCAAATTTGACGTGATAAAGGGAACGGCTTTCAAAGTGATAGTTGCAAATGAGGATCAAGTTGAGATTTCCTTCACTAGAACATGGGATGTGTCCCTCAAAGACCATCTGGTTCCATTGAATATCGATAAAAGGTTCATAATGCTTCGTGGTACTTCAGGCTTCTATTCATATGCTATTTACGAACACTTAAGCGACTGGCCTGCTTTCAATCTTGACGAAACCAGAATTGCTTTCAAGCTCAGAAAAGACAAGTTCCATTATATGGCAATGGCGGATAACAGACAAAGGAGCATGCCTCTTCCTGATGATCGAGTGCCACCAAGAGGCCAACCCCTTGCATACCCCGAAGCGGTTCTTCTTCTCGATCCGGTTGAACCCGAACTCAAAGGAGAAGTGGATGACAAGTACCAATATTCATGTGACAACAAAGATAGCCAAGTTCATGGGTGGCTGTGTACGGATCCTGCTGTTGGATTTTGGCTAATTACGCCCACCAATGAGTTCCGTTCTGGTGGGCCCCTCAAACAAAACCTAACTTCCCATGTGGGACCCACCACGCTCGCCGTGTTTCTAAGTGCCCATTATAGTGGAGAGGACTTGGTGCCAAAATTCAAAGAAGGAGAGGCATGGAAGAAGGTTTTTGGTCCTATTTTCATCTATTTGAATTCTCCTAATGATGATACCAGTGATGATGACCCCCATAAAATGCTATGGGAAGATGCTAAACTCCAGATGAATGTGGAAGTAGAAAGTTGGCCTTACACTTTTCCAGACTCAGAGGATTACCCAAAGTGGTATGAACGAGGTATTGTTAATGGCAGGCTATTAGTTAAAGAGAGGTATATTAGCGATGATGACCGTATATCAGCAAAAGGTGCATATGTTGGTTTGGCTTCCCCTGGAGAAGTTGGATCATGGCAAAGAGAATGCAAGAATTATCAGTTCTGGAGTAAAGCAGATGAAGATGGATATTTCTCCATCAGCAATGTTCGTGCTGGTGACTATAATTTATATGCATGGGTACCTGGTTTTATTGGAGACTACAAATATGATTCAGTTATAACCATAGCACAAGGGTCTCCTACTTACATTGAATTGGATGATCTTGTTTATGAGCCTCCAAGAGATGGGCCAACACTCTGGGAAATAGGGATTCCAGATCGTACAGCTGCAGAGTTCTATGTTCCTGATCCAAATCCCAAATACATCAACAAACTCTATCTTAATCATCCTCATAAGTTAATACTCGCCTTAATTAATTAA 1479 0.4219 MKTQLGVQLTTEDRHVVMENGIVRVTISNPEGIVTGIQYNGIDNLLEVLNDKSNRGYWDLVWSSPTSSGTTGKFDVIKGTAFKVIVANEDQVEISFTRTWDVSLKDHLVPLNIDKRFIMLRGTSGFYSYAIYEHLSDWPAFNLDETRIAFKLRKDKFHYMAMADNRQRSMPLPDDRVPPRGQPLAYPEAVLLLDPVEPELKGEVDDKYQYSCDNKDSQVHGWLCTDPAVGFWLITPTNEFRSGGPLKQNLTSHVGPTTLAVFLSAHYSGEDLVPKFKEGEAWKKVFGPIFIYLNSPNDDTSDDDPHKMLWEDAKLQMNVEVESWPYTFPDSEDYPKWYERGIVNGRLLVKERYISDDDRISAKGAYVGLASPGEVGSWQRECKNYQFWSKADEDGYFSISNVRAGDYNLYAWVPGFIGDYKYDSVITIAQGSPTYIELDDLVYEPPRDGPTLWEIGIPDRTAAEFYVPDPNPKYINKLYLNHPHKLILALIN 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271886g00019 492 SUPERFAMILY Galactose mutarotase-like 8 297 IPR011013 GO:0003824|GO:0005975|GO:0030246
Stsc271886g00019 492 Pfam Polysaccharide lyase family 4, domain II 363 434 IPR029413 -
Stsc271886g00019 492 SUPERFAMILY Starch-binding domain-like 383 436 IPR013784 GO:0030246
Stsc271886g00019 492 FunFam Rhamnogalacturonate lyase B 336 436 - -
Stsc271886g00019 492 Gene3D - 6 310 IPR014718 GO:0030246
Stsc271886g00019 492 Pfam Rhamnogalacturonate lyase family 4 204 IPR010325 -
Stsc271886g00019 492 Gene3D - 339 438 - -
Stsc271886g00019 492 Coils Coil 491 492 - -
Stsc271886g00019 492 SUPERFAMILY Galactose-binding domain-like 448 486 IPR008979 -
Stsc271886g00019 492 CDD RGL4_N 9 295 - -
Stsc271886g00019 492 Pfam Polysaccharide lyase family 4, domain III 451 484 IPR029411 -
Stsc271886g00019 492 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 11 484 - -
Stsc271886g00019 492 CDD RGL4_M 339 436 IPR029413 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271886g00019 Stsc-Chr271886 144588 148680 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271886g00019 7 486 Polysaccharide Lyase AT1G09890 70.062 0.0 697
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271886g00019 K18195 - gmx:100814721 840.876