Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271886g00018 ATGAAGACACAACTAGGGGTGCAACTCACCACTGAAGATCGTCATGTGGTGATGGAGAATGGAATTGTAAGAGTAACGATTTCAAATCCAGAAGGAATAGTGACTGGAATTCAGTATAATGGAATCGACAACTTGCTTGAAGTTTTGAATGACAAATCTAATAGAGGGTATTGGGACCTTGTTTGGAGCTCACCAACAAGTTCAGGAACCACTGGCAAATTTGACGTGATAAAGGGAACGGCTTTCAAAGTGATAGTTGCAAATGAGGATCAAGTTGAGATTTCCTTCACTAGAACATGGGATGTGTCCCTCAAAGACCATCTGGTTCCATTGAATATCGATAAAAGGTTCATAATGCTTCGTGGTACTTCAGGCTTCTATTCATATGCTATTTACGAACACTTAAGCGACTGGCCTGCTTTCAATCTTGACGAAACCAGAATTGCTTTCAAGCTCAGAAAAGACAAGTTCCATTATATGGCAATGGCGGATAACAGACAAAGGAGCATGCCTCTTCCTGATGATCGAGTGCCACCAAGAGGCCAACCCCTTGCATACCCCGAAGCGGTTCTTCTTCTCGATCCGGTTGAACCCGAACTCAAAGGAGAAGTGGATGACAAGTACCAATATTCATGTGACAACAAAGATAGCCAAGTTCATGGGTGGCTGTGTACGGATCCTGCTGTTGGATTTTGGCTAATTACGCCCACCAATGAGTTCCGTTCTGGTGGGCCCCTCAAACAAAACCTAACTTCCCATGTGGGACCCACCACGCTCGCCGTGTTTCTAAGTGCCCATTATAGTGGAGAGGACTTGGTGCCAAAATTCAAAGAAGGAGAGGCATGGAAGAAGGTTTTTGGTCCTATTTTCATCTATTTGAATTCTCCTAATGATGATACCAGTGATGATGACCCCCATAAAATGCTATGGGAAGATGCTAAACTCCAGATGAATGTGGAAGTAGAAAGTTGGCCTTACACTTTTCCAGACTCAGAGGATTACCCAAAGTGGTATGAACGAGGTATTGTTAATGGCAGGCTATTAGTTAAAGAGAGGTATATTAGCGATGATGACCGTATATCAGCAAAAGGTGCATATGTTGGTTTGGCTTCCCCTGGAGAAGTTGGATCATGGCAAAGAGAATGCAAGAATTATCAGTTCTGGAGTAAAGCAGATGAAGATGGATATTTCTCCATCAGCAATGTTCGTGCTGGTGACTATAATTTATATGCATGGGTACCTGGTTTTATTGGAGACTACAAATATGATTCAGTTATAACCATAGCACAAGGGTCTCCTACTTACATTGAATTGGATGATCTTGTTTATGAGCCTCCAAGAGATGGGCCAACACTCTGGGAAATAGGGATTCCAGATCGTACAGCTGCAGAGTTCTATGTTCCTGATCCAAATCCCAAATACATCAACAAACTCTATCTTAATCATCCTCATAAATTTAGGCAATATGGATTATGGGAGAGATATGCAGAATTATACCCTGACAGAGATTTAATCTACACAGTTGGAGTTAGTGATTACACCAAAGACTGGTTCTTTGCTCAAGTTACCAGGAAGAAAGATGATACATATCAAGGAACTACTTGGCAAATCAATGATTCAAAGGCCAACTAG 1632 0.4191 MKTQLGVQLTTEDRHVVMENGIVRVTISNPEGIVTGIQYNGIDNLLEVLNDKSNRGYWDLVWSSPTSSGTTGKFDVIKGTAFKVIVANEDQVEISFTRTWDVSLKDHLVPLNIDKRFIMLRGTSGFYSYAIYEHLSDWPAFNLDETRIAFKLRKDKFHYMAMADNRQRSMPLPDDRVPPRGQPLAYPEAVLLLDPVEPELKGEVDDKYQYSCDNKDSQVHGWLCTDPAVGFWLITPTNEFRSGGPLKQNLTSHVGPTTLAVFLSAHYSGEDLVPKFKEGEAWKKVFGPIFIYLNSPNDDTSDDDPHKMLWEDAKLQMNVEVESWPYTFPDSEDYPKWYERGIVNGRLLVKERYISDDDRISAKGAYVGLASPGEVGSWQRECKNYQFWSKADEDGYFSISNVRAGDYNLYAWVPGFIGDYKYDSVITIAQGSPTYIELDDLVYEPPRDGPTLWEIGIPDRTAAEFYVPDPNPKYINKLYLNHPHKFRQYGLWERYAELYPDRDLIYTVGVSDYTKDWFFAQVTRKKDDTYQGTTWQINDSKAN 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271886g00018 543 Pfam Polysaccharide lyase family 4, domain II 363 434 IPR029413 -
Stsc271886g00018 543 CDD RGL4_N 9 295 - -
Stsc271886g00018 543 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 11 538 - -
Stsc271886g00018 543 FunFam Rhamnogalacturonate lyase B 336 436 - -
Stsc271886g00018 543 SUPERFAMILY Galactose mutarotase-like 8 297 IPR011013 GO:0003824|GO:0005975|GO:0030246
Stsc271886g00018 543 Gene3D - 339 438 - -
Stsc271886g00018 543 SUPERFAMILY Galactose-binding domain-like 448 537 IPR008979 -
Stsc271886g00018 543 SUPERFAMILY Starch-binding domain-like 383 436 IPR013784 GO:0030246
Stsc271886g00018 543 Gene3D - 6 309 IPR014718 GO:0030246
Stsc271886g00018 543 Pfam Polysaccharide lyase family 4, domain III 451 538 IPR029411 -
Stsc271886g00018 543 Pfam Rhamnogalacturonate lyase family 4 204 IPR010325 -
Stsc271886g00018 543 CDD RGL4_M 339 436 IPR029413 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271886g00018 Stsc-Chr271886 142755 148680 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271886g00018 7 537 Polysaccharide Lyase AT1G09890 71.670 0.0 790
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271886g00018 K18195 - gmx:100814721 947.577