Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271886g00017 ATGGATAATGGGATAGTTAAGGTTACAATATCAAATCCAGAAGGGTTTGTTACAGAGATTCAGTACAACGGAATCGACAATTTGCTTGAAGTTCTTAACACTGAATCTAACAGAGGATACTACGATATGGTGTGGGATGAAGGTAAGAAAAAGGGGGCGAGGAAGAAAGGTGCATTTGACAGAATGGATGCTACAGAGATGAGTGTGATAGTGGAAAATGAGGAACAAGTGGAGTTATCATTCACCAGAACATGGAATTCCTCACTACAGGGGTTGTATCCCCCACTCAACATTGATAAAAGGTTTGTAATGGTTGATGGTTCTTCTGGGTTTTACACGTATGCAATATATGAGCATTTGGAGGAATGGCCAGGATTCAATCTCTCCAATACAAGGATTGCTTTCAAGCTTAGAAAGGACAAGTTCAATTACATGGTGGTAGAAGAGGAGAGACAAAGATTTATGCCTCTTCCTGATGATAGGGAAGAAGGAAGAGGCCAAGTTCTTGCTTACCCAGAAGCTGTCTTGCTTACCAATCCTATTGAGCCTCAATTCAAAGGAGAGGTGGATGACAAGTATCAATATTCAATTGAGAGCAGAAAGAACCATGTTCATGGTTGGATATCCATGGATCCACCAAAATCCACTGGGTTCTGGATCATCACCCCAAGCAATGAGTTCAGATGCGGTGGGCCCCTCAAACAGTTCCTTGCTTCTCACGTCGGCCCCACTGCCCTCTCCGTATTTCATAGTACCCACTATTCAGGGGTGGATTTGATAATGAGGTTTGGGCCCAATGAGGCATGGAAGAAAGTATATGGGCCCATATTTATATATCTTAATTCGCTCTCTAATGGAGAAAGCCCAACTCAGCTCTGGGACGACGCCAGGCAACAGACGGTGAATGAAATTGAAAGCTGGCCATATAGGTTTCCAGCTTCGAAGGATTTTGTGAAAGGTGAGGAAAGGGCTAAACTTGAAGGAAGATTGCTTGTCCATGACAGGTACATGAGTGATGCATTCATCCCAGTTGGCAGTGCTTATGTGGGATTAGCTTCTCCAGGAGAGCCTGGGTCCTGGCAAAGGGAATCCAAGGGTTATCAATTTTGGACAATTACTGATGATAAAGGCTATTTCTCAATTACTAACATACTCCCTGGGAACTATAGTCTCTACTCATGGGTCAAAGGATACATTGGTGACTATAAATATCATCAAGTCATTAACATAACTTCAGGGAGTGAAGTTAATGTGGGTGAAGTTGTTTATGAGCCAGCAAGAGAAGGTCCAACTCTATGGGAAATAGGTATACCTGATCGTTCTGCTGCTGAGTTCTATGTTCCAGACCCTAACCACAAATACATTAATACACTTTATCTTAACCATACAGATAGGTATAGGCAATATGGGTTGTGGGAGAGATATGCTGATTTATATCCACAAGAAGACTTAGTATACAATGTTAGCACAAGTGACTATACAAAAGATTGGTTCTTTGCTCAGGTTAACAGGAAGAAGGAGAACAATAACACATACGAAGCAACCACTTGGAAAATTAATTTCAATTTGGAAAATGTAATTGCTAATGGAACTTACAAATTGAGAGTGGCTCTGGCCTCTGTACATTTTGCTGAGTTACAGATTCGGGTGAACAATAATTCAGAAGGAAATCCAGCATTATTTAGAAGTGGAGTTATTGGATCAGAAAACACCATAGCTAGACATGGAATTCATGGCTTTTATTGGCTCTTCAATGTTGATATTGAAGGCACTCTTCTTGGGCAGGGAAATAATTCTATCTTTTTTTCACAGCCTAATAATACAAGTCCTTTTCAGGGAATTTTGTATGATTATATTCGTTTAGAAGCACCACCCCATTACACAAATTTCACATCAAAATTAAATAATATTCTTCCAAATTAA 1923 0.4035 MDNGIVKVTISNPEGFVTEIQYNGIDNLLEVLNTESNRGYYDMVWDEGKKKGARKKGAFDRMDATEMSVIVENEEQVELSFTRTWNSSLQGLYPPLNIDKRFVMVDGSSGFYTYAIYEHLEEWPGFNLSNTRIAFKLRKDKFNYMVVEEERQRFMPLPDDREEGRGQVLAYPEAVLLTNPIEPQFKGEVDDKYQYSIESRKNHVHGWISMDPPKSTGFWIITPSNEFRCGGPLKQFLASHVGPTALSVFHSTHYSGVDLIMRFGPNEAWKKVYGPIFIYLNSLSNGESPTQLWDDARQQTVNEIESWPYRFPASKDFVKGEERAKLEGRLLVHDRYMSDAFIPVGSAYVGLASPGEPGSWQRESKGYQFWTITDDKGYFSITNILPGNYSLYSWVKGYIGDYKYHQVINITSGSEVNVGEVVYEPAREGPTLWEIGIPDRSAAEFYVPDPNHKYINTLYLNHTDRYRQYGLWERYADLYPQEDLVYNVSTSDYTKDWFFAQVNRKKENNNTYEATTWKINFNLENVIANGTYKLRVALASVHFAELQIRVNNNSEGNPALFRSGVIGSENTIARHGIHGFYWLFNVDIEGTLLGQGNNSIFFSQPNNTSPFQGILYDYIRLEAPPHYTNFTSKLNNILPN 640
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271886g00017 640 SUPERFAMILY Starch-binding domain-like 365 420 IPR013784 GO:0030246
Stsc271886g00017 640 Pfam Rhamnogalacturonate lyase family 1 189 IPR010325 -
Stsc271886g00017 640 SUPERFAMILY Galactose-binding domain-like 429 622 IPR008979 -
Stsc271886g00017 640 FunFam Rhamnogalacturonate lyase B 319 418 - -
Stsc271886g00017 640 CDD RGL4_C 433 622 - -
Stsc271886g00017 640 CDD RGL4_N 1 282 - -
Stsc271886g00017 640 Pfam Polysaccharide lyase family 4, domain III 431 621 IPR029411 -
Stsc271886g00017 640 Pfam Polysaccharide lyase family 4, domain II 347 417 IPR029413 -
Stsc271886g00017 640 CDD RGL4_M 322 419 IPR029413 -
Stsc271886g00017 640 Gene3D - 345 419 - -
Stsc271886g00017 640 Gene3D - 429 622 - -
Stsc271886g00017 640 Gene3D - 1 295 IPR014718 GO:0030246
Stsc271886g00017 640 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 1 625 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271886g00017 Stsc-Chr271886 132269 138983 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271886g00017 1 624 Polysaccharide Lyase AT1G09890 63.360 0.0 813
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271886g00017 K18195 - gmx:100786488 985.711