Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271886g00016 ATGGCTTCAATACAATACAATGGTGTTGATAATTTGCTTCAAGTTCTTAATGCAGAAGATGATAGAGGGTATTGGGACATTGTTTGGAATGAAGCAGATAGCACAGCAACAACTGGGATATATGAAAGGGTGGTAGGGACAAGTTATAAAGTGATAGTGGAAAATGATGAACAATTGGAGATTTCATTTACCACAACATGGAATCCATCTTCCATGCCACAAAAGCAATCTCCTCTAAATATTGACATTAGGTATGTGATGCTACGGAATTCGTTTGGTTTGTATTGTTATGGCATTTTTGAACACCGAAAAGAATGGCCTGCTTTCAACATACCCCAAATCAGAATGGTCTTCAAGCTTCGAAAAGATAAGTTTGATTATATGGCTATAGGGGATAATAAGCAAAGATCAATGCCTGTTCCAGATGACAGGTTACCACCCAGAGGAAAAACACTGACTCCACCTGAAGCTGTCTTGCTTCTTGATCCCATTGAACCACTCTTCAAGGGAGAGGTGGATGACAAGTATCAATACTCAAGCAATAACAAAGATATGAAGGTGCATGGATGGATAACCTCCAAATCTGATGAAACTAATCCTGCAATGGGGTTTTGGGTAATTATGCCAAGCAATGAGTTCCAATCAGGTGGCCCTCTTAAACAGAACCTCACCTCTCATGTAGGCCCAATTACTCTTGCCATGTTTCAGAGTTCTCATTATGCAGGAGAGGATTTAGTAGTGAGAGTCCAAAAAAATGAGTCATGGAAGAAGGTTTTTGGGCCAATCTTTGTTTACCTTAACACTACTACTACTACTACTTCATCAGAAAACCAGCAAGTCCAACCATGGCTATGGAAAGATGCCAAAGATCAGATGAGGAAACAAGTTGAAAGGTGGCCCTATGATTTTCCTGCTTCAGGGGATTTTCACAAGTCTCACCAACGAGCCACTGTTTATGGCACATTTACAGTCCAAGACAGGTTCATAAGTGATAAGCAGATATTGGCACAAGGTGCATATGTTGGTCTGGCACCACCAGGAGCAGCTGGATCCTGGCAAACTGAATGCAAGGGATACCAATTTTGGACCCAAACCAATAAAAGAGGCTTCTTCTCCATTAACAACGTACTTAGTGGGAGTTACAATCTTTTTGCTTGGGTCCCTGGTTTCATTGGAGATTATTGTAACAATGTTGTCCTCACAATAAAGCCAGGAAGTAAAGTAAATGTTGGTGAGATTGTATATAAACCCCCAAGAGATGGACCAACTTTGTGGGAAATAGGCATTCCTGATCGCTCTGCAGCTGAATTTTATGTTCCTGATCCCAATCCAAATTATGTTAACAAACTTTATCTCAATCATCCGGAGAGGTTTAGGCAGCATGGCTTATGGGAAAGATATGCAGATTTATATCCAAATGAAGATTTGATTTACACTGTTGGACATAGTGACTATAGAAAACATTGGTTCTTTGCCCATGTTACCAGGAAGAAAGATGATGGCAGTTACCATGGAACAACATGGCAGATTAAGTTCAAGCTTCATAGTGTGCGGAGAAATGGAACTTATAAGCTGCGACTAGCACTTGCGACTGCAAATTTCTCCGAATTACAAGTTAGAGTGAATAATCCAAAAGAAGATCCACCAATGTTTACAAGTGGGGTGATTGGGAAGGACAACACCATAGCTAGACATGGAATTCATGGACTCTATAGACTATACAACATTGATGTGTCATCTCATTTACTAATGAAAGATGAAAATATCATATTTCTTACACAAACTATGGCTAATGGTCCCTTTGAAGGCATAATGTACGACTATATTCGTTTAGAAGCTCCTCCTCCTCCTCATAAATCATAA 1863 0.3988 MASIQYNGVDNLLQVLNAEDDRGYWDIVWNEADSTATTGIYERVVGTSYKVIVENDEQLEISFTTTWNPSSMPQKQSPLNIDIRYVMLRNSFGLYCYGIFEHRKEWPAFNIPQIRMVFKLRKDKFDYMAIGDNKQRSMPVPDDRLPPRGKTLTPPEAVLLLDPIEPLFKGEVDDKYQYSSNNKDMKVHGWITSKSDETNPAMGFWVIMPSNEFQSGGPLKQNLTSHVGPITLAMFQSSHYAGEDLVVRVQKNESWKKVFGPIFVYLNTTTTTTSSENQQVQPWLWKDAKDQMRKQVERWPYDFPASGDFHKSHQRATVYGTFTVQDRFISDKQILAQGAYVGLAPPGAAGSWQTECKGYQFWTQTNKRGFFSINNVLSGSYNLFAWVPGFIGDYCNNVVLTIKPGSKVNVGEIVYKPPRDGPTLWEIGIPDRSAAEFYVPDPNPNYVNKLYLNHPERFRQHGLWERYADLYPNEDLIYTVGHSDYRKHWFFAHVTRKKDDGSYHGTTWQIKFKLHSVRRNGTYKLRLALATANFSELQVRVNNPKEDPPMFTSGVIGKDNTIARHGIHGLYRLYNIDVSSHLLMKDENIIFLTQTMANGPFEGIMYDYIRLEAPPPPHKS 620
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271886g00016 620 CDD RGL4_N 3 267 - -
Stsc271886g00016 620 FunFam Rhamnogalacturonate lyase B 311 410 - -
Stsc271886g00016 620 SUPERFAMILY Galactose-binding domain-like 420 612 IPR008979 -
Stsc271886g00016 620 Gene3D - 312 411 - -
Stsc271886g00016 620 Gene3D - 1 281 IPR014718 GO:0030246
Stsc271886g00016 620 CDD RGL4_C 425 612 - -
Stsc271886g00016 620 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 2 615 - -
Stsc271886g00016 620 SUPERFAMILY Starch-binding domain-like 311 410 IPR013784 GO:0030246
Stsc271886g00016 620 CDD RGL4_M 314 413 IPR029413 -
Stsc271886g00016 620 Pfam Polysaccharide lyase family 4, domain III 423 611 IPR029411 -
Stsc271886g00016 620 Gene3D - 421 612 - -
Stsc271886g00016 620 Pfam Rhamnogalacturonate lyase family 2 172 IPR010325 -
Stsc271886g00016 620 SUPERFAMILY Galactose mutarotase-like 108 269 IPR011013 GO:0003824|GO:0005975|GO:0030246
Stsc271886g00016 620 Pfam Polysaccharide lyase family 4, domain II 337 409 IPR029413 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271886g00016 Stsc-Chr271886 125553 130816 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271886g00016 1 614 Polysaccharide Lyase AT1G09890 58.795 0.0 769
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271886g00016 K18195 - gmx:100815677 924.465