Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271886g00006 ATGGCGGCGATGAACCCACAGCCTCTGCAGGCGCGTCCGTTCGAGGGAGAGGATGCCGTACTGCTCGACGAGGACGACGTCGTTGAGTATGAGGATGGTGGTGGTGGTGGCGATGGTTGCGATGATGCTGTGCAAGAGTTGGAGGAAGAGAATAAGAATTCGGTTGGCGTTGGCGCGCGTTTGAATCACGCGGCAGTTGGTATGCCTTGGCGGAGTAGTGAGCTCACTCTTTCTTTCGAGGGTGAAGTTTATGTATTCCCTGCTGTCACGCCTCACAAGGTGCAAGCAGTTTTGCTCCTTTTAGGAGGATATGATGTGCCCATGGTAGTGCCCGCAGTTGAAGTACCACTTGATCAAAGTAACAGGGACATGGATGACACACCAAAGCGGTCAAACCTTTCTAGAAGAATAGCCTCCTTGGTCAGGTTCCGTGAGAAACGCAAGGAAAGATGTTTTGACAAGAAAATTAGGTACACCGTGAGAAAAGAAGTGGCACAGAGGATGCATCGAAAAAATGGGCAGTTTGCATCCTTGAAGGAAAGCCCAGGTTCATCTAACTGGGATTCAGCAGAGGGTTCTCCTCAAGATGGACCTCATTCTGAAACACTGCGTAGATGTCAACATTGTGGTGTGAGTGAAAATAATACACCTGCAATGCGTCGGGGGCCAGCAGGACCTAGGACTTTATGTAATGCATGTGGGCTTATGTGGGCTAACAAGGGTACACTCAGGGATCTCAGTAAGGGTGGAAGAAATGTCTCTGTTGAACAAAGTGATCCAGTGCGTGTAAGATCAGTGCTTAATGCTTTTCTGGATTACATTGGTTTGCAATAA 834 0.4892 MAAMNPQPLQARPFEGEDAVLLDEDDVVEYEDGGGGGDGCDDAVQELEEENKNSVGVGARLNHAAVGMPWRSSELTLSFEGEVYVFPAVTPHKVQAVLLLLGGYDVPMVVPAVEVPLDQSNRDMDDTPKRSNLSRRIASLVRFREKRKERCFDKKIRYTVRKEVAQRMHRKNGQFASLKESPGSSNWDSAEGSPQDGPHSETLRRCQHCGVSENNTPAMRRGPAGPRTLCNACGLMWANKGTLRDLSKGGRNVSVEQSDPVRVRSVLNAFLDYIGLQ 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271886g00006 277 ProSitePatterns GATA-type zinc finger domain. 206 233 IPR000679 GO:0006355|GO:0043565
Stsc271886g00006 277 MobiDBLite consensus disorder prediction 169 202 - -
Stsc271886g00006 277 SMART tify_2 68 103 IPR010399 -
Stsc271886g00006 277 CDD ZnF_GATA 205 249 IPR000679 GO:0006355|GO:0043565
Stsc271886g00006 277 Pfam tify domain 72 102 IPR010399 -
Stsc271886g00006 277 Pfam CCT motif 136 177 IPR010402 GO:0005515
Stsc271886g00006 277 ProSiteProfiles GATA-type zinc finger domain profile. 200 256 IPR000679 GO:0006355|GO:0043565
Stsc271886g00006 277 MobiDBLite consensus disorder prediction 177 196 - -
Stsc271886g00006 277 SMART GATA_3 200 253 IPR000679 GO:0006355|GO:0043565
Stsc271886g00006 277 ProSiteProfiles Tify domain profile. 68 103 IPR010399 -
Stsc271886g00006 277 PANTHER GATA TRANSCRIPTION FACTOR 28 4 260 IPR045280 GO:0006355
Stsc271886g00006 277 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 201 250 - -
Stsc271886g00006 277 Pfam GATA zinc finger 206 242 IPR000679 GO:0006355|GO:0043565
Stsc271886g00006 277 Gene3D - 198 258 IPR013088 GO:0006355|GO:0008270
Stsc271886g00006 277 ProSiteProfiles CCT domain profile. 136 178 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271886g00006 Stsc-Chr271886 49435 54261 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271886g00006 74 248 Tify Gene Family AT1G51600 58.602 3.56e-64 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Stsc271886g00006 CCT 9.4e-14 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271886g00006 - - gmx:100801328 367.851