Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271886g00004 ATGTACGGCTCAATGAACGTCCCCAATCAGATCTCCGCCGCCGAAGACAACGGCGCCGCCGCCTCCGACTCCGTCGACAACCACCACCACAATCATTATAATTCCCACGGCCTTGAAGACGGTGCTGGCGGAGTCGTTGAAGATGCCGACACCGTCTACGTTTCCGGCGGCGGAGGCCCCGATATGTCTATAATTCCCTGTGAAGATTCTAGCCAGCTCACGCTCTCGTTTCGTGGCCAAGTTCAAGCGGTGTTGTTGCTGTTGGGAGGGTGCGAAATGCCTTCCTCGGGTTCGCAATGTGCAGAGTTGTCGCCTCAGAATCAGAGGGGTGTAGTGGAATTCCCTGGAAGGTGCAGTCAGCCACATCGAGCTGCATCGTTGAATAGGTTCAGACAGAAGAGGAAAGAGCGATGCTTCGACAAGAAAGTTAGATACAGCGTGCGTCAAGAAGTTGCACTCAGGATGCAACGTAATAAAGGTCAATTTACTTCGTCTAAGAAACAAGATGGAGCTAATAGTTGTGGTTCAGACCAAGAGTCAATGCAAGATGCTGTTCAATCAGAAACATCATGCACACACTGCGGCATAAGTTCAAAACAAACCCCAATGATGCGGAGAGGGCCATCTGGTCCAAGGTCACTTTGCAATGCTTGTGGGCTATTTTGGTCAAACAGGGGTACTATGAGGGACCTTTCCAAGAGAAACCAGGATCACACACTTGCATTACCCGAGCCGGTTAATGAAGGCAATAACTCAGATTGTCGAACCGCAGTCCCTGAAAATAACAATGTTGCTGTTTTCTCTGAAAATGATAATGCTCCTCCGCTGGCAACTGATCGATGA 843 0.4994 MYGSMNVPNQISAAEDNGAAASDSVDNHHHNHYNSHGLEDGAGGVVEDADTVYVSGGGGPDMSIIPCEDSSQLTLSFRGQVQAVLLLLGGCEMPSSGSQCAELSPQNQRGVVEFPGRCSQPHRAASLNRFRQKRKERCFDKKVRYSVRQEVALRMQRNKGQFTSSKKQDGANSCGSDQESMQDAVQSETSCTHCGISSKQTPMMRRGPSGPRSLCNACGLFWSNRGTMRDLSKRNQDHTLALPEPVNEGNNSDCRTAVPENNNVAVFSENDNAPPLATDR 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271886g00004 280 Gene3D - 181 240 IPR013088 GO:0006355|GO:0008270
Stsc271886g00004 280 MobiDBLite consensus disorder prediction 156 181 - -
Stsc271886g00004 280 CDD ZnF_GATA 190 237 IPR000679 GO:0006355|GO:0043565
Stsc271886g00004 280 ProSitePatterns GATA-type zinc finger domain. 191 218 IPR000679 GO:0006355|GO:0043565
Stsc271886g00004 280 ProSiteProfiles CCT domain profile. 123 165 IPR010402 GO:0005515
Stsc271886g00004 280 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 185 237 - -
Stsc271886g00004 280 MobiDBLite consensus disorder prediction 22 36 - -
Stsc271886g00004 280 SMART GATA_3 185 238 IPR000679 GO:0006355|GO:0043565
Stsc271886g00004 280 Pfam GATA zinc finger 191 228 IPR000679 GO:0006355|GO:0043565
Stsc271886g00004 280 ProSiteProfiles GATA-type zinc finger domain profile. 185 236 IPR000679 GO:0006355|GO:0043565
Stsc271886g00004 280 Pfam CCT motif 123 165 IPR010402 GO:0005515
Stsc271886g00004 280 MobiDBLite consensus disorder prediction 15 43 - -
Stsc271886g00004 280 PANTHER GATA TRANSCRIPTION FACTOR 28 12 263 IPR045280 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271886g00004 Stsc-Chr271886 43123 47826 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271886g00004 66 247 Tify Gene Family AT4G24470 62.887 3.69e-79 240
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Stsc271886g00004 CCT 1.6e-15 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271886g00004 - - pvu:PHAVU_008G182900g 369.007