Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271885g00023 ATGGTGGCCTATTACTACAACAACAAATCACATCTTACAAAGACTCAAACCAAACAACACCAAAAGTCTTCACTGTGGAAGAATTACAAGATGCCACCAACAACTTTGATGAAGCCAGGATCCTTGGCAAAGGTGGCCAACCAAGGCACAGTTTACAAAAGAGTGTTAACAGACTATAATATTGTGGCAATCAAAAGGTCCAAACTCAATGATATAAGCCAAGTTGAACAGTTTATCAATGAAGTGGTTTTGCTTTCACAAATTAACCATAGGAATGTGGTTAAACTCTTAGGTTGTAGCTTAGAGACTGAACTAGATTGGAAGGTGAGATTGCGAATAGCTACCAAAGCTGCTGGTGCTTTGGCATACCTTCATTCTGCTGCTTCTGTGCCTGTCATTCATAGGGATGTTAAAACAAGTAACATATTGCTTGATCATAATTTGAGTACAAAAGTCACTGATTTTGGAACTTCAACAATTATTCCTCTTGATCATACTCAATTAACTACTCTAGTACAGGGGACACTAGAGTATCTTGATCCTGAATACTTTCACACAAGCCATTTAACTGAGAAAAGTGATGTTTATAGTTTTGGAGTAGTTTTGGCTGAGTTACTCACAGGAAGAAAAGCGCTTTCTTTCTTTCTACCAGAGATGGATAGAAACCTTGCTTTATACTTTGTTTCTTCTATGGAACAAGGTAATCTACTTCAGATAGTGGATACATGCATACTAGAAGTTGCAAAAGTTGAAGAACTAATTGAGTTTGCTAATATAACGAAGTGGTGTTTGAGAGTGAAGAGAGAAGAACGACCTACAATGAAAGAAGTTGCCATGGGACTCGAGAGACTTAGAATTGAAGCGAAAATCAATCAGGAAAGTAGTGACTTGTCAGCTTTAAAAGAAGCTAACACATCGGCATCAACTTTCCAGATTGAAGATGACGGTGGTGGACAAAATGGGACGAGTTTTAGTATGTGCCGGTTTCACATAGGCCAATGGTTAGCCTTGTATCTTATGCCTTGTTGTTGA 1032 0.3828 MVAYYYNNKSHLTKTQTKQHQKSSLWKNYKMPPTTLMKPGSLAKVANQGTVYKRVLTDYNIVAIKRSKLNDISQVEQFINEVVLLSQINHRNVVKLLGCSLETELDWKVRLRIATKAAGALAYLHSAASVPVIHRDVKTSNILLDHNLSTKVTDFGTSTIIPLDHTQLTTLVQGTLEYLDPEYFHTSHLTEKSDVYSFGVVLAELLTGRKALSFFLPEMDRNLALYFVSSMEQGNLLQIVDTCILEVAKVEELIEFANITKWCLRVKREERPTMKEVAMGLERLRIEAKINQESSDLSALKEANTSASTFQIEDDGGGQNGTSFSMCRFHIGQWLALYLMPCC 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271885g00023 343 Gene3D Transferase(Phosphotransferase) domain 1 104 317 - -
Stsc271885g00023 343 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 47 291 IPR045274 GO:0007166
Stsc271885g00023 343 FunFam Wall-associated receptor kinase 2 84 304 - -
Stsc271885g00023 343 ProSitePatterns Serine/Threonine protein kinases active-site signature. 132 144 IPR008271 GO:0004672|GO:0006468
Stsc271885g00023 343 Gene3D Phosphorylase Kinase; domain 1 32 103 - -
Stsc271885g00023 343 ProSiteProfiles Protein kinase domain profile. 31 284 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc271885g00023 343 SUPERFAMILY Protein kinase-like (PK-like) 48 281 IPR011009 -
Stsc271885g00023 343 Pfam Protein kinase domain 112 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc271885g00023 343 SMART serkin_6 37 284 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271885g00023 Stsc-Chr271885 207969 209081 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271885g00023 46 287 Receptor kinase-like Gene Family AT1G21240 55.224 1.00e-94 288
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Stsc271885g00023 Pkinase 6.1e-27 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271885g00023 - - gmx:100798027 340.887