Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271885g00019 ATGAATGCGTGGAATCAAACGATTGCTCTATTGGAGCAATATGCAAGAACCTACCTGGTAGCTTTAACTGTTCATGTCCGGAAGGATAAGATGGAGACGGGAGAGAAAATGGAACAAAATGCAGTCGTAAGTCCAGGGCACAAATCATGCGTTAGTCTAGGTGTCATAACAATACTTGTGATTAGCTTTCTTGTGTATTGGAGAATGAAGGAAACGAGACTAAATAAACTTAAGGTTCAGTTTTTTCAACAAAATGGTGGCTTCATCCTACAACAACACATTTCAAGACATAGAGGGTCAATGGAAACAGCTAAAGTCTTCACTGTGGAAGAATTAAATAAGGCCACCAACAACTTTGATGAATCCAAGATCTTAGGCAAAGGGGGTCAAGGAACAGTTTATAAAGGATTATTGTCAGACAATAGAACTGTTGCAATTAAAAAATCCAAAATTAGTGACTCAAGCCAAGTTGAGCAATTCATCAATGAAGTTGTGTTGCTTTCCCAAATCAACCATAGAAATGTGGTTAGACTCTTAGGTTGTTGCTTAGAAACAGAAGTTCCATTACTTGTCTATGAGTTCATCCCCAATGGTACCCTTTTTGAACATCTTCATGATCATAACCAATCTTTCAAATTTACTTGGGGAACAAGATTAAGAATAGCAATAGAAATTGCTGGGGCCTTAGCATACTTGCACTCTGGTATTTCTATGCCAATCATACACAGAGACATCAAAACTACCAATATTCTACTTGATGCTGATCTCACGGTAAAAATTTCTGATTTTGGAGCCTCAAAGATTGTTCCTCTTGATCAAACTGAGTTGACCACTTTGGTGCAAGGGACACTAGGGTATCTTGACCCTGAATACATGCACACCAGCCAGTTAACTGAGAAAAGTGATGTTTATAGTTTTGGCGTCGTCCTAGCAGAACTTCTTACAGGAAAGAAGGTAATCTCTTTCACTATGCCCGAGGTTAGAAACCTTGCAGCATACTTTGTTTCTTCAATGGAAGAAGGGAATCTACTTGAGGTTGTGGACAAACATATCATAAATGAGGCAAAGGTGGAGCACCTTGTGGGATTTGCCAATGTTGCAAAACAGTGTTTGAGAGTAAAGAGGGAAGAAAGGCCTACCATGAAAGAAGTTGCGTCGGAGCTTGAGGGGCTTAAAGTAGTTGTTGGAGAGAAGCACCGATGGGAAAATAGTGACAAATCATCTTCGCAAGAGACTAATAGTTTGTTAAAAGCACCAACATCCTCTGTATTCGATGTTGAAAGTTCTAAGTTTGATAGCATAAGTTAG 1308 0.3922 MNAWNQTIALLEQYARTYLVALTVHVRKDKMETGEKMEQNAVVSPGHKSCVSLGVITILVISFLVYWRMKETRLNKLKVQFFQQNGGFILQQHISRHRGSMETAKVFTVEELNKATNNFDESKILGKGGQGTVYKGLLSDNRTVAIKKSKISDSSQVEQFINEVVLLSQINHRNVVRLLGCCLETEVPLLVYEFIPNGTLFEHLHDHNQSFKFTWGTRLRIAIEIAGALAYLHSGISMPIIHRDIKTTNILLDADLTVKISDFGASKIVPLDQTELTTLVQGTLGYLDPEYMHTSQLTEKSDVYSFGVVLAELLTGKKVISFTMPEVRNLAAYFVSSMEEGNLLEVVDKHIINEAKVEHLVGFANVAKQCLRVKREERPTMKEVASELEGLKVVVGEKHRWENSDKSSSQETNSLLKAPTSSVFDVESSKFDSIS 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271885g00019 435 FunFam Wall-associated receptor kinase 2 89 194 - -
Stsc271885g00019 435 Pfam Protein kinase domain 120 385 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc271885g00019 435 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 47 402 IPR045274 GO:0007166
Stsc271885g00019 435 ProSiteProfiles Protein kinase domain profile. 119 402 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc271885g00019 435 SMART serkin_6 119 395 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc271885g00019 435 CDD STKc_IRAK 125 391 - -
Stsc271885g00019 435 Gene3D Phosphorylase Kinase; domain 1 90 194 - -
Stsc271885g00019 435 Gene3D Transferase(Phosphotransferase) domain 1 195 415 - -
Stsc271885g00019 435 FunFam Wall-associated receptor kinase 2 195 413 - -
Stsc271885g00019 435 SUPERFAMILY Protein kinase-like (PK-like) 101 389 IPR011009 -
Stsc271885g00019 435 ProSitePatterns Serine/Threonine protein kinases active-site signature. 240 252 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271885g00019 Stsc-Chr271885 148496 150102 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271885g00019 52 434 Receptor kinase-like Gene Family AT1G21230 54.688 5.59e-140 416
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Stsc271885g00019 Pkinase 1.2e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271885g00019 - - ahf:112706010 606.29